PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574328.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1064aa    MW: 119856 Da    PI: 6.5086
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-2270171199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_012574328.1  70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDATWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 160
                     99*****************************954.4444.48************************************************..557 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l++++ r+
  XP_012574328.1 161 KQQLLLGIKRS 171
                     88789988775 PP
2Auxin_resp120.21.6e-39196278183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaas++s+F+++YnPr+s+ eFv++++k++kal+++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_012574328.1 196 AAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 278
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-4360199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-4162185IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-1969161No hitNo description
PROSITE profilePS5086312.11170172IPR003340B3 DNA binding domain
SMARTSM010195.2E-2370172IPR003340B3 DNA binding domain
PfamPF023621.7E-2070171IPR003340B3 DNA binding domain
PfamPF065071.2E-34196278IPR010525Auxin response factor
PfamPF023092.5E-89351023IPR033389AUX/IAA domain
PROSITE profilePS5174523.0279371021IPR000270PB1 domain
SuperFamilySSF542772.06E-89501015No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MQKEADFIPS YPNLPSKLIC MLHNVALHAD PETDEVYAQM TLQPVNKYDK EAMLASDMGL  60
KQNQQPTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEI VAKDLHDATW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KQQLLLGIKR SSRQQPALSS  180
SVISSDSMHI GILAAAAHAA SNNSPFTIFY NPRTSPCEFV IPLAKYNKAL YTHVSLGMRF  240
RMMFETEESG VRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERP SRVSIWEIEP  300
VVTPFYICPP PFFRPKFPKQ PGMPEDESEI ENAFKRAMPW LGDELGMKDA SSSIFPGLSL  360
VQWMSMQQNN NQFSSPQSGL LPPSMLSSNS LHGNLNTDDP SKILNFQAPS LQFNKPNLPN  420
QVNQLQHSPN SWSQQQQQQQ RLQSLLQTPL NQLQQQQQQQ QRQQQLPGMQ NLPQPQQQPQ  480
QTQQNAQQPQ QQQQHQQQQQ QPSQNANMNN GTVASNQIPN QCVQQPVTYS QLQQQLLSTS  540
IPTQQNFQSV SKSPLLMTSL PQDSQFQQQM DQQASLLQRQ QQQQQNQLQQ SSLHLLQQSL  600
LQRAPQQPQM NQISQQNISE QQQPQMQLLQ KLQQQQQQQQ QQQQQPLSTS CALLQSQLMQ  660
QQNTHQQLPQ LPLSQHQPQQ LGNNALSMEK LLNNNYSSPG LMHPQQLPVN HPQNTQKSPT  720
NTRAPSAFTD GDAPSCSTSP STNNCQTSPP NLLKRNQPDT FGGPSIVETT NNLMQEHQSK  780
SDTQIKHELH SVKGPDKQKY KGAINDQMEA SSGTSYGIDP GNIHQNFPLS NFYMDGDVHS  840
QPRNNLPFCP NIDGLTPDPL LSRGYDSQKD LQNLLSNYGG APRDIEIETE LSTAAISSQS  900
FGVPNMSFKP GCSNDIAIPD TGVLNNGLWS NQTQRMRTYT KVQKCGSVGR CIDVTRYKGY  960
DELRNDLARM FGIEGLLEDP LRTDWKLVYV DHENDILLVG DDPWEEFVNC VQSIKILSSA  1020
EVQQMSLEGD LGHVPISNQA CSGTESGNAW RAQYDDNSAA SFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-143829996388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488112.10.0auxin response factor 19 isoform X1
RefseqXP_012574328.10.0auxin response factor 19 isoform X2
TrEMBLA0A1S2XEH90.0A0A1S2XEH9_CICAR; Auxin response factor
TrEMBLA0A1S3EFZ10.0A0A1S3EFZ1_CICAR; Auxin response factor
STRINGXP_004488112.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19