PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 407aa MW: 46193.3 Da PI: 9.884 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 28 | 72 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l+d + +G++ W Ia+++ g+t qc+ rw++yl XP_012574325.1 28 NWTQEEDGILKDQIGIHGTEKWMIIASKLK-GKTTRQCRRRWFSYL 72 7****************************9.************997 PP | |||||||
2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 78 | 119 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g W+++Ed+ l + k+lG++ W+ Ia+ + gRt++ +k+r+ XP_012574325.1 78 KGVWSPDEDKVLCETQKMLGNR-WTEIAKVIR-GRTDNAVKNRF 119 799*******************.*********.**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.86E-12 | 8 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.972 | 21 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-8 | 25 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 28 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.90E-9 | 28 | 72 | No hit | No description |
Pfam | PF00249 | 2.0E-10 | 28 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-24 | 51 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.628 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-11 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-11 | 78 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-18 | 80 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.86E-8 | 81 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MQTNLDMKKK QKKQGDKESN KKENPYANWT QEEDGILKDQ IGIHGTEKWM IIASKLKGKT 60 TRQCRRRWFS YLNADVKKGV WSPDEDKVLC ETQKMLGNRW TEIAKVIRGR TDNAVKNRFS 120 ALCRKRETYA ALAKENNIPY IDPNNIRNIS HHGHDTAATS ESTVPVKSMR SHLQNGISTN 180 PQPRTLFAEL AQNSNNVNNL QGTCHVSNAK SNSSGQYNNS QGTFLKEDVL KIRACGQTEF 240 LSSLAQKVEI ENIKKIWMVL QEFPNRTKGS DIVRHKIQDL PPVILKDMVE ELKSSNDRGH 300 PCSRKINEDS PGSSEYSTVS TLLSQSNGDN VERSLHQDIG TQMKATQFIV KKEVIEDVKG 360 VLYTGKVEQD KRSLRCVCFT KNGIQFPSSS DPYFQILGCR NSQPRIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 29 | 126 | 10 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012574325.1 | 0.0 | transcription factor MYB88-like isoform X4 | ||||
TrEMBL | A0A1S3EEQ5 | 0.0 | A0A1S3EEQ5_CICAR; transcription factor MYB88-like isoform X4 | ||||
STRING | XP_004511226.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 2e-77 | MYB family protein |