PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574137.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 429aa    MW: 48980.1 Da    PI: 8.7518
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.5e-20131232199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g ++ p+ +ae+         +++ +  ++  +d + ++W++k+iyr++++r++lt+GW++Fv  ++L +gD++vF   + +
  XP_012574137.1 131 FAKILTQSDANNGGGFSCPRYCAEKLfpcldysTSPPVQ--DIFPKDIHDQKWQFKHIYRGTPKRHLLTTGWSQFVTHKKLVAGDSIVFL--KAE 221
                     89*********************999****986555555..7************************************************..558 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++  +++++r+
  XP_012574137.1 222 NGDIRFGIRRA 232
                     88899999986 PP
2Auxin_resp88.11.7e-29293375183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++FevvY+Pr+ t+eF vk++ v+++l++++ +GmR++ma+etedss++++  Gtv+  + +dp +Wp+S+Wr L+
  XP_012574137.1 293 AATLAANMQPFEVVYYPRSNTPEFFVKTSAVRASLHIRWFPGMRIQMAIETEDSSRISWfNGTVTFFEPIDP-KWPHSPWRALQ 375
                     68899*******************************************************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-33120235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-26125234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-18130231No hitNo description
SMARTSM010191.6E-12131233IPR003340B3 DNA binding domain
PfamPF023628.1E-18131232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223131233IPR003340B3 DNA binding domain
PfamPF065071.4E-24293375IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MREKGKICNP SPSEMESKKK MKDMEKSVDP ELWHACAGGM VQIPQVNNKI FYFPQGHAEH  60
ARELVNFMDY PQIPHLIPCR VVATKYMADH ETDEVYVKLK LVPLHSEVSL EDDNAECSTK  120
ASETKDKPQC FAKILTQSDA NNGGGFSCPR YCAEKLFPCL DYSTSPPVQD IFPKDIHDQK  180
WQFKHIYRGT PKRHLLTTGW SQFVTHKKLV AGDSIVFLKA ENGDIRFGIR RARREICAVL  240
EPPSGYEPAT ATAIQEEDNN NSKVQRNSRG NALRISDGMM GKGKVSAQQV IQAATLAANM  300
QPFEVVYYPR SNTPEFFVKT SAVRASLHIR WFPGMRIQMA IETEDSSRIS WFNGTVTFFE  360
PIDPKWPHSP WRALQVTWDD TELLQNVKRL NPWQVKIEAN VPPIHLPTFT PPPPRKKLRT  420
SLFREVRVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-731539634388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413419PRKKLRT
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510646.10.0auxin response factor 18
SwissprotQ93YR91e-152ARFP_ARATH; Auxin response factor 16
TrEMBLA0A1S2YVN70.0A0A1S2YVN7_CICAR; Auxin response factor
STRINGXP_004510646.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-147auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]