PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574125.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 496aa    MW: 57691 Da    PI: 6.3885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B387.41.2e-27144247198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+k++t    +k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_012574125.1 144 FDKIETXXXXGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElFR 238
                     88999999*********************955567889*************************************************55466566 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                      +l++ ++r
  XP_012574125.1 239 HRLYIDWRR 247
                     666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-35135248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-24141232IPR015300DNA-binding pseudobarrel domain
CDDcd100177.81E-20142231No hitNo description
SMARTSM010199.1E-19144249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183144244IPR003340B3 DNA binding domain
PfamPF023624.7E-25144248IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MELMQNSHSK EEEEEEEELE EEEEEEEVII TTPSKEEEFE EEEEEESKHQ QQHYPSNLSL  60
SSSSPSTTNP TWLGVGIIKN DDDDHNGGLG FLHQNLTNQQ RNLKQLDFME LSLGNKKDVV  120
NESQSNFQQG STSNQQEHEK EHMFDKIETX XXXGKLNRLV IPKQHAEKYF PLDSTSNEKG  180
LLLNFEDRNG KLWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ RGVGELFRHR  240
LYIDWRRRIS NHHHNHNIDP SSTTLFTPFF LPNPNQQNLS LRWGGANSRF YSLPYPSPQS  300
QRHPQQQNHL DPFSHMNYNY HMYPFHQHGS GNYHHHDPSS VFYMRSLAPP SMSMVDQARQ  360
QQQQQQQVVG GVNASHSQMI IDSVPVSHHH HHHYQHQNQN HYHSAGNLTN STNSAAKRLR  420
LFGVNMECGN SSTNEETKCF IPPSSSSSSS QPSLQHFKVP HEDNTLSQST RFEDKRGEAS  480
MIFGLDPSLQ YHYQKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-571392483113B3 domain-containing transcription factor NGA1
5os9_B9e-571392483113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6913902e-70EF691390.1 Trifolium repens clone CloverSSR-4_G01_002_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192186.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor NGA1
TrEMBLA0A3Q7Y2U10.0A0A3Q7Y2U1_CICAR; LOW QUALITY PROTEIN: B3 domain-containing transcription factor NGA1
STRINGXP_004510612.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-61B3 family protein