PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 29594.1 Da PI: 6.7249 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.4e-39 | 22 | 122 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn+ k++k l++ +++am+++++++++ra+dPv G+++ i++lq q+e kael+ XP_012574097.1 22 ACAACKYQRRKCAPDCILAPYFPHDKQRQFLNAHKLFGVSNINKIIKYLDPPLKDQAMRTIIFQSDMRANDPVGGCYKYIQDLQAQIEYCKAELD 116 7********************************************************************************************** PP DUF260 96 llkeel 101 l++++l XP_012574097.1 117 LVHQQL 122 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.547 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-37 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MNNNNITCIT RNNSNNNNTT QACAACKYQR RKCAPDCILA PYFPHDKQRQ FLNAHKLFGV 60 SNINKIIKYL DPPLKDQAMR TIIFQSDMRA NDPVGGCYKY IQDLQAQIEY CKAELDLVHQ 120 QLALFRAQAQ QQQQVYGGDQ VIMNGDSLLG FYNQGSIVSA NNPHYQYNIQ QMVPQQEQEQ 180 YLMMHESNSS IHNSPLQQHI NSWAMQSSIS LSSLSLHGQS SNASDEYDHK QILDIPCDER 240 NELGFDSREI LHHSLWPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 23 | 122 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 23 | 122 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574097.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC140915 | 1e-108 | AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510487.2 | 0.0 | LOB domain-containing protein 22 | ||||
TrEMBL | A0A1S2YV92 | 0.0 | A0A1S2YV92_CICAR; LOB domain-containing protein 22 | ||||
STRING | XP_004510487.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 8e-51 | LOB domain-containing protein 22 |