PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573710.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 521aa    MW: 53922.1 Da    PI: 8.1103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_012573710.1 60 FVCEICNKGFQRDQNLQLHRRGH 82
                    89*******************88 PP
2zf-C2H211.20.0011136158123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +++
  XP_012573710.1 136 WKCDKCSKKYAVQSDWKAHSKVC 158
                     58*****************9877 PP
3zf-C2H211.60.00083166184523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr++++ +H   +
  XP_012573710.1 166 DCGTVFSRRDSFITHRAFC 184
                     9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.97E-75982No hitNo description
PfamPF121718.4E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355210101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.97E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MPVDLDNVST PSGEASISSS GNQTTPKPTA KKKRNLPGMX DPEAEVIALS PTTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEIRKRV YVCPEPSCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGS REYKCDCGTV FSRRDSFITH  180
RAFCDALAEE NAKSQTVGKA NSESDSKVLT GDSSPPSMPA ATVTAATTAQ SNSVVSSGLE  240
THKIENPPQI IEEPQVVVTT TTASTATTTN ALNGSCSSNS ASSTSNGGAT TTSGVFASLF  300
ASSTASTSAS LQSQTLAFTD LIRSMGCPDR PADFSAPPTS EAISLCLSTN HGSSIFGTGG  360
QECRQYAPTP QPPAMSATAL LQKAAQMGAA ATNASLLRGL GIVSSSAPSS SSGQQDCLHW  420
GLGQVEPEGS SLVPAGLGLG LPCDSDSGLK ELMLGTPSMF GPKQTTLDFL GLGMAAGGSA  480
GGGLSALITS IGGGGGGGLD VTAAASFGNG EFSGKDIGRS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34132201372Zinc finger protein JACKDAW
5b3h_F4e-34132201372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484841e-135AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192493.10.0zinc finger protein ENHYDROUS
SwissprotQ9LVQ71e-180IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A3Q7XVP30.0A0A3Q7XVP3_CICAR; zinc finger protein ENHYDROUS
STRINGXP_004509244.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-115C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]