PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573663.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 363aa    MW: 41145.9 Da    PI: 8.8598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11177222555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er RR++i + f  L  l+P++     kK++Ka++L  A++Y+k+L+
  XP_012573663.1 177 HIIAERIRREKISQQFIALSALIPNL-----KKMDKASVLGDAIKYVKQLK 222
                     889***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.913172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9177221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-10177226No hitNo description
SMARTSM003531.8E-13178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAFASKESTT IFFHHNATTI QQTDSNLFCS RQTRLGLYDS AKAKGGLLTL GLLANNKNKN  60
YNMTSIDESW TNWLCDTEPD DYSLINQLDT NTDNVSNLES SNLERPSKLL KKGSSSTYSY  120
ILSFENENPQ PIKVEQALNP KTKVMNSKNE HKRVNIQEIN KKNYSFTRST TNHTPDHIIA  180
ERIRREKISQ QFIALSALIP NLKKMDKASV LGDAIKYVKQ LKDQVKVLEE QSKRKQSVES  240
IVAVKKLSQL FVDEDVSDTS SYCCNGNSDE TLKRNLLLPE VEARLSGKSV MIRILCEKDK  300
VVMVNVYRAI EKFHLSVINA SSFSFGSSVL AITIIAQMED EFNISVQKLA KNLSIELEKL  360
KEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13176225857Transcription factor MYC2
5gnj_B1e-13176225857Transcription factor MYC2
5gnj_E1e-13176225857Transcription factor MYC2
5gnj_F1e-13176225857Transcription factor MYC2
5gnj_G1e-13176225857Transcription factor MYC2
5gnj_I1e-13176225857Transcription factor MYC2
5gnj_M1e-13176225857Transcription factor MYC2
5gnj_N1e-13176225857Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192440.10.0transcription factor bHLH18-like isoform X1
RefseqXP_027192441.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A3Q7Y3690.0A0A3Q7Y369_CICAR; transcription factor bHLH18-like isoform X1
STRINGXP_004509201.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-49bHLH family protein