PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012573661.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 352aa MW: 39831.5 Da PI: 4.5341

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012573661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.3e-10	175	219	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR+++ +f L l+P + kK++Ka++L A++Y+k+L XP_012573661.1 175 HIMAERLRREKLSVSFIALGALIPGL-----KKMDKATVLADAIKYVKEL 219 999*********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.538	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-15	174	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-15	175	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-7	175	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.49E-10	175	224	No hit	No description
SMART	SM00353	4.7E-12	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEEINNTPMN TSETNKWLSD LEIDEYNLFP EESNLNFLDA DEDEFVSHDI ASVFEEQTKQ 60 QCLTSECTST TLSNSFTDET CFESFDFDFD FERQTKQLKT IDNDNNIIDT FSTKVSSSSS 120 NSSFQSQILC FDPSINTQQN EVVSVSQPQL GTKGSSKNQN LESQNKRSRA NSHDHIMAER 180 LRREKLSVSF IALGALIPGL KKMDKATVLA DAIKYVKELK ERLEVLEEQR NKRKADSVEK 240 QTKADLCSDD EYSSSDESIE GAAESQFQVD AKVSGKEILI RIHCKKQKGL LVKIISEIQR 300 FQLFVVKNSL LPFGESILDI TVIAQMGEGY NLTTKELVKN LREAALKFMS LS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEEINNTPMN TSETNKWLSD LEIDEYNLFP EESNLNFLDA DEDEFVSHDI ASVFEEQTKQ  60
QCLTSECTST TLSNSFTDET CFESFDFDFD FERQTKQLKT IDNDNNIIDT FSTKVSSSSS  120
NSSFQSQILC FDPSINTQQN EVVSVSQPQL GTKGSSKNQN LESQNKRSRA NSHDHIMAER  180
LRREKLSVSF IALGALIPGL KKMDKATVLA DAIKYVKELK ERLEVLEEQR NKRKADSVEK  240
QTKADLCSDD EYSSSDESIE GAAESQFQVD AKVSGKEILI RIHCKKQKGL LVKIISEIQR  300
FQLFVVKNSL LPFGESILDI TVIAQMGEGY NLTTKELVKN LREAALKFMS LS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012573661.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012573661.1	0.0	transcription factor NAI1-like
TrEMBL	A0A1S3EFC3	0.0	A0A1S3EFC3_CICAR; transcription factor NAI1-like
STRING	XP_004509037.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11069	12	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-35	bHLH family protein