PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012573564.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 274aa MW: 31590.2 Da PI: 8.4732 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.4 | 1.8e-23 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++snr+vt+skR+ gilKKA+ELS+LCd+++++++fs+tgk XP_012573564.1 10 KLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGK 53 679***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.292 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-25 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.44E-25 | 2 | 84 | No hit | No description |
PRINTS | PR00404 | 2.7E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-20 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGRVKLKIKK LESTSNRHVT YSKRKSGILK KAKELSILCD IDILLLMFSP TGKPTLLQGE 60 RGNMEEIIAK FAQLSPQERA KRKMESLEAL KKTFRKLDHD VKIQDFLGSS SQTIEELTHQ 120 MRVLQFQLAE IQQRLSYWNN MEKINNLEHL RQMEDSLRES INRLCLQKEN LGKRQLISLE 180 CANQLPEGMT LPLMMADLQE SQPLSWLLSG DNHQLMLHSE PKYLPFSDNG NKEVECSNDI 240 SLTGYSGYIG NGKLXGWELS TCHNFGSGRW WFLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 6e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 6e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 6e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012573564.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027192216.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Swissprot | Q7X9I0 | 3e-88 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A3Q7Y2V5 | 0.0 | A0A3Q7Y2V5_CICAR; agamous-like MADS-box protein AGL65 isoform X1 | ||||
STRING | GLYMA17G10941.1 | 1e-154 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2750 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 6e-80 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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