PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573396.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1017aa    MW: 114474 Da    PI: 7.5765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-2118119199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_012573396.1  18 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDEK 109
                     99*****************************9545444.38************************************************..5678 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_012573396.1 110 QQLLLGLRRA 119
                     8899999986 PP
2Auxin_resp122.62.8e-40144226183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++G ++g+sdldp+rW+nS+Wr+L+
  XP_012573396.1 144 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQ 226
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-448147IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-4110133IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-1817109No hitNo description
PROSITE profilePS5086311.80118120IPR003340B3 DNA binding domain
SMARTSM010196.8E-2118120IPR003340B3 DNA binding domain
PfamPF023621.4E-1918119IPR003340B3 DNA binding domain
PfamPF065072.3E-35144226IPR010525Auxin response factor
PfamPF023092.1E-9885976IPR033389AUX/IAA domain
PROSITE profilePS5174524.191890983IPR000270PB1 domain
SuperFamilySSF542778.83E-8904968No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    Send to blast
MLASDIGLKQ NRQPTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDYS MQPPAQELIA  60
KDLHDNAWTF RHIYRGQPKR HLLTTGWSVF ISTKRLFAGD SVLFIRDEKQ QLLLGLRRAN  120
RQQPALSSSV ISSDSMHIGI LAAAAHAAAN NSPFTIYYNP RASPSEFVVP LAKYNKAMYT  180
QVSLGMRFRM MFETEESGVR RYTGAITGIS DLDPIRWKNS QWRNLQVGWD ESTAGERPSR  240
VSVWDIEPVV TPFYICPPPF FRPKFPRQPG MSDDESNIEN AFKRAMPWIG DEFGMNDASS  300
SFFPGLSLVQ WMGMQQNNQF SAAQSGCFPS MLSSNTLQGN LGTDDPSKLL SFQAPVLSAP  360
NLQFNKPNLP NQINQLQQPP VSWPQQQQQL QQQQQQQQLQ QQQQQQQQLQ QQQQQKLQSL  420
SQIPTNQLQQ QRQQQLTESQ NLTLLQQQMP QQLGQQTQKH LQSSQQAITN NGVVSSNQIT  480
NQFVQQPSAY AQLQQQQLLS GSIPHQQSFQ SANKNTFPLT SLPQDSQFQQ RIDSQASLLQ  540
RQQQQTQLQQ SQLQVLQQNM PQRVPPNPPV TQTSQQNASE QQLHMQFLHK LQQQQQLLST  600
SSPLLQSQLL QQQNTHQQIQ QLPQLPTSQH HTQQLSNNAF STEKLLNSNN LSSSSLMQSQ  660
HLPVNRTQNT QKPLTITRAP STLTDGEAPS CSTSPSTNNC PVSPPNLLKR NQQVPNMLGG  720
CLLVEPASNM IRELQSKTDK HIKHEFANVK GSDQLKYKRT TIDQLEASSG TSYCLDPGNA  780
QQNFPLSNFC MEGDVQSNPR NNLLFDSSFD GLMPDTMLSR GYDSQKDLQN LLSNYGGAPR  840
DIETELSTAD ISSQSFGLPN MPGCSNDVGI NDTSGVLNNG LRANQTQRMR TYTKVQKRGS  900
VGRCIDVTRY KKYDELRYDL ARMFGIEGQL EDPQRTDWKL TYVDHENDIL LVGDDPWEEF  960
VRNVQSIKIL SSAEVQQMSL DGDLGNVQLP NQACSGTDSG NAWRGQYDDN SAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1255247144388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444830.0AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508022.10.0auxin response factor 19 isoform X5
RefseqXP_012573396.10.0auxin response factor 19 isoform X5
TrEMBLA0A1S3EEL90.0A0A1S3EEL9_CICAR; Auxin response factor
STRINGXP_004508018.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19