PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573395.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1119aa    MW: 125772 Da    PI: 6.874
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.71.6e-21120221199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_012573395.1 120 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDEK 211
                     99*****************************9545444.38************************************************..5678 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_012573395.1 212 QQLLLGLRRA 221
                     8899999986 PP
2Auxin_resp122.43.2e-40246328183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++G ++g+sdldp+rW+nS+Wr+L+
  XP_012573395.1 246 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQ 328
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-44110249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-41112235IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-18119211No hitNo description
SMARTSM010196.8E-21120222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801120222IPR003340B3 DNA binding domain
PfamPF023621.6E-19120221IPR003340B3 DNA binding domain
PfamPF065072.6E-35246328IPR010525Auxin response factor
PfamPF023092.4E-99871078IPR033389AUX/IAA domain
PROSITE profilePS5174524.1919921085IPR000270PB1 domain
SuperFamilySSF542779.81E-810061070No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MFVCVIDFGE RKTINSDLWH ACAGPLVSLP PVGSLVVYFP QGHSEQVAAS MQKQTDFIPS  60
YPNLPSKLIC LLHNVALHAD PETDEVYAQM TLQPVNQYDK EAMLASDIGL KQNRQPTEFF  120
CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSMQPPAQEL IAKDLHDNAW TFRHIYRGQP  180
KRHLLTTGWS VFISTKRLFA GDSVLFIRDE KQQLLLGLRR ANRQQPALSS SVISSDSMHI  240
GILAAAAHAA ANNSPFTIYY NPRASPSEFV VPLAKYNKAM YTQVSLGMRF RMMFETEESG  300
VRRYTGAITG ISDLDPIRWK NSQWRNLQVG WDESTAGERP SRVSVWDIEP VVTPFYICPP  360
PFFRPKFPRQ PGMSDDESNI ENAFKRAMPW IGDEFGMNDA SSSFFPGLSL VQWMGMQQNN  420
QFSAAQSGCF PSMLSSNTLQ GNLGTDDPSK LLSFQAPVLS APNLQFNKPN LPNQINQLQQ  480
PPVSWPQQQQ QLQQQQQQQQ LQQQQQQQQQ LQQQQQQKLQ SLSQIPTNQL QQQRQQQLTE  540
SQNLTLLQQQ MPQQLGQQTQ KHLQSSQQAI TNNGVVSSNQ ITNQFVQQPS AYAQLQQQQL  600
LSGSIPHQQS FQSANKNTFP LTSLPQDSQF QQRIDSQASL LQRQQQQTQL QQSQLQVLQQ  660
NMPQRVPPNP PVTQTSQQNA SEQQLHMQFL HKLQQQQQLL STSSPLLQSQ LLQQQNTHQQ  720
IQQLPQLPTS QHHTQQLSNN AFSTEKLLNS NNLSSSSLMQ SQHLPVNRTQ NTQKPLTITR  780
APSTLTDGEA PSCSTSPSTN NCPVSPPNLL KRNQQVPNML GGCLLVEPAS NMIRELQSKT  840
DKHIKHEFAN VKGSDQLKYK RTTIDQLEAS SGTSYCLDPG NAQQNFPLSN FCMEGDVQSN  900
PRNNLLFDSS FDGLMPDTML SRGYDSQKDL QNLLSNYGGA PRDIETELST ADISSQSFGL  960
PNMPGCSNDV GINDTSGVLN NGLRANQTQR MRTYTKVQKR GSVGRCIDVT RYKKYDELRY  1020
DLARMFGIEG QLEDPQRTDW KLTYVDHEND ILLVGDDPWE EFVRNVQSIK ILSSAEVQQM  1080
SLDGDLGNVQ LPNQACSGTD SGNAWRGQYD DNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-170934945388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444830.0AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508020.10.0auxin response factor 19 isoform X3
RefseqXP_012573395.10.0auxin response factor 19 isoform X3
TrEMBLA0A1S2YPR90.0A0A1S2YPR9_CICAR; Auxin response factor
STRINGXP_004508018.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19