PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012573296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | AP2 | ||||||||
Protein Properties | Length: 523aa MW: 57087.5 Da PI: 9.1276 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.4 | 1.7e-13 | 153 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g k + ++lg ++ +++Aa+a++ a++k++g XP_012573296.1 153 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsrKGrQGIYLGGYDKEDKAARAYDLAALKYWG 213 57*******************6666644785338**********99*************98 PP | |||||||
2 | AP2 | 47.2 | 5.5e-15 | 256 | 307 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_012573296.1 256 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 307 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.02E-16 | 153 | 223 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.43E-20 | 153 | 223 | No hit | No description |
Pfam | PF00847 | 1.4E-10 | 153 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.965 | 154 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-26 | 154 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-14 | 154 | 223 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 155 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.32E-25 | 256 | 317 | No hit | No description |
Pfam | PF00847 | 6.8E-10 | 256 | 307 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 256 | 317 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-33 | 257 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 257 | 315 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-18 | 257 | 316 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 297 | 317 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MDSSSSSPPN TLAFSLSNHF PIPSPSHSHL SLFHSFTTYP PSTPSLTLTG SNTVEPSPEA 60 KATNGGTTNL SIFTGEHKFE DFLGSSVATT RSTASTCAPT QLPQFSSDSD LYDSELKKTI 120 AACFPRGFTT EPNSVPQKPS PKKTVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG 180 QSRKGRQGIY LGGYDKEDKA ARAYDLAALK YWGPTTTTNF PTSNYEKELE EMKNMTRQEF 240 VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI 300 AAIKFRGLNA VTNFDMSRYD VKSIANTSLP IGGLSNKNKN PTDSVSESKC HQEASKSDER 360 NPSSSTTTTT FTLSQQPSST STTLNFALPI KQDPSSDYWS ILGFHNNNHS VVVPSANNHN 420 TPFNMDFSVA PSNTNNAMFF SGSTNFVQQQ NGNGSGSSGG SSSSSSSTSS IPFATPIFSL 480 NSNNTSYENG SNYGNWIGVG PSLHTFQTHA KPSLFQTPIF GME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012573296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012573296.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q6PQQ3 | 1e-150 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1S3EEB4 | 0.0 | A0A1S3EEB4_CICAR; AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
STRING | XP_004507863.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-136 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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