PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012573215.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Nin-like | ||||||||
Protein Properties | Length: 938aa MW: 104541 Da PI: 5.7505 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.2 | 7.7e-29 | 590 | 640 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk +gvc+T+LKriCRq+GI+RWP+Rki+++ XP_012573215.1 590 EKNVSLSVLQQYFSGSLKDAAKRIGVCPTTLKRICRQHGISRWPSRKINKV 640 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.006 | 579 | 660 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-26 | 592 | 640 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.01E-21 | 843 | 931 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.8E-22 | 844 | 926 | No hit | No description |
PROSITE profile | PS51745 | 20.772 | 847 | 929 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.3E-20 | 847 | 929 | IPR000270 | PB1 domain |
Pfam | PF00564 | 9.6E-17 | 849 | 928 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 938 aa Download sequence Send to blast |
MEDQFSSTEK GIGFWTPLDV GMKSSTTSED MFNNISELMN FDTYAGWCNG SSSVNDHDHS 60 LVHEFSSFAS IPYSPHDGLN LVEHINGPFF MTEIGGGNYN DMDNSTSYGG NYQLEFLDTN 120 NSNETNNSDS QQGQNGSFQL LNSNNSSDMC NYLIPKSPSW SLDERMMSAL SFFKESAGEG 180 ILAQVWVPVK YGDEFILTTS DQPYLLDQKL AGYREVSRLF TFSAEMKMGS CPGLPGRVFI 240 SHVPEWTSNV GYYHKSEYLR LEHAISHDVR GSIALPISDM LSEVSCSAVL ELVTTKEKLN 300 FDKELEFVSH ALQRVNLRTI MPPRLLPQCV SINKRAALTE IIDVLRAVCH AHRLPLALTW 360 IPCCYSEGKG EESERIRIKE GHTSSDEKCV LCIEESACYI NDKMVGGFVH ACADHHLEEG 420 QGISGKALQS NHPFFYTDVK AYDVSEYPLV HHARKYSLNA AVAIRLRSTY TNDDDYVLEF 480 FLPINMTGSS EQQLLLDNLS DTMRRICKSL RTVSEAELRG IQGSQDGFQK ENVSGFFSLS 540 RGNSQIAFTT GDQDLFQMSL NATNLKNIQG HCQATNAPRK QIEKKRSAVE KNVSLSVLQQ 600 YFSGSLKDAA KRIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV LDSVQGVEGV 660 LKFDPHTGGF VAGGSIIQQI GSHKSLMFPE NFFAQDLAPA PITTREPISV TPPPCENSAI 720 KLEDGLKKEN ASSVDCIQDS TSITMHDEPC QTSWIWTKTQ DCPKQTSIGS VFEKQDDQCG 780 LNKTSSFSLI EHELGGDENN QPTSSSMTDS SNASGSMVRR SSSGSQQSFE NRKRSKMKSV 840 CVDSESKFAV KANYKGDTIR FKFDPSVGCF RLYEEVTTRF KLQNGSFTLK YLDDEEEWVM 900 LVNDSDLKEC VEILSDVGTH CVKLLVRDIH GSIVTSNS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012573215.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012573214.1 | 0.0 | protein NLP9-like | ||||
Refseq | XP_012573215.1 | 0.0 | protein NLP9-like | ||||
TrEMBL | A0A1S3EBL3 | 0.0 | A0A1S3EBL3_CICAR; protein NLP9-like | ||||
STRING | XP_004507430.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |