PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573093.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 325aa    MW: 37138.8 Da    PI: 7.7601
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.5e-133894155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  XP_012573093.1 38 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 94
                    57*******************99998888888888********************98 PP
2AP251.42.6e-16137188155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_012573093.1 137 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 188
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1538104IPR016177DNA-binding domain
PfamPF008471.1E-83894IPR001471AP2/ERF domain
PROSITE profilePS5103219.01939102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1339103IPR001471AP2/ERF domain
SMARTSM003809.7E-2239108IPR001471AP2/ERF domain
PRINTSPR003673.5E-64051IPR001471AP2/ERF domain
CDDcd000181.25E-23137198No hitNo description
PfamPF008474.9E-12137188IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18137198IPR016177DNA-binding domain
PROSITE profilePS5103218.334138196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-18138197IPR001471AP2/ERF domain
SMARTSM003801.8E-24138202IPR001471AP2/ERF domain
PRINTSPR003673.5E-6178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKKSQKTLK NTSTSSSTMV KQRTRKSIPR NSPPQRSSIY RGVTRHRWTG RYEAHLWDKN  60
CWNESQSKKG RQGAYDDEEA AARAYDLAAL KYWGQDTILN FPVSNYQDEL KEMENLSKEE  120
YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAATAYD  180
MAAIEYRGLN AVTNFDLSRY INWLRPKNKD NKNNINNNHT QNSSNDEELD LNQELDGSAT  240
SASSTFDLIL KSSSKFKEML ENTSSENSRT PSPPESSLPS RTFPEDIQTI FETQDSEVYT  300
ENDDDIIFGE LSSIAAPIFH YGLDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507033.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-114AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S2YMF30.0A0A1S2YMF3_CICAR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_004507033.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]