PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572936.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 691aa    MW: 76903.1 Da    PI: 6.6762
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.1e-24125225198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_012572936.1 125 FCKILTASDTSTHGGFSVLRKHATEClppmdMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGENG 217
                     99****************************977777888*************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_012572936.1 218 ELRVGVRR 225
                     9*****98 PP
2Auxin_resp100.42.5e-33251332183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeteds..serrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k++vGmRfkm+fe++ds  se+r+sGt+vgv+d++p +W nSkWrsLk
  XP_012572936.1 251 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLAAISNKFTVGMRFKMRFEGDDSaeSEKRFSGTIVGVEDISP-HWANSKWRSLK 332
                     789***************6..9*******************************93346788**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-39118254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-40118240IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-23125227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308125227IPR003340B3 DNA binding domain
CDDcd100171.61E-20125225No hitNo description
PfamPF023623.1E-22125225IPR003340B3 DNA binding domain
PfamPF065074.7E-31251332IPR010525Auxin response factor
PfamPF023091.4E-7567615IPR033389AUX/IAA domain
PROSITE profilePS5174524.755579660IPR000270PB1 domain
SuperFamilySSF542774.81E-12580655No hitNo description
PfamPF023095.5E-7620662IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MLNRGSNVSA EVGGCSDEMY EVQWEKIAGP LVEVPRVGQR VFYFPQGHME QLEASTNQEL  60
NQRIPLLKLP NKILCRVVNV HLLAEQETDE VYAQITLVPE SNQDEPTIPD LCPAEXXPRP  120
TFHAFCKILT ASDTSTHGGF SVLRKHATEC LPPMDMSQPT PTQELVAKDL HGYEWRFKHI  180
FRGQPRRHLL TTGWSTFVTS KRLVAGDTFV FLRGENGELR VGVRRLARQS SSMPSSVISS  240
QSMHLGVLAT ASHAVATQTL FVVYYKPRTS QFIVSVNKYL AAISNKFTVG MRFKMRFEGD  300
DSAESEKRFS GTIVGVEDIS PHWANSKWRS LKVQWDEPAS ITRPDRVSPW EIEPFVSSAS  360
TPSVQPTAAK SKRPRPPSEV PDVDTTSAGS IFWDARLTPP DRTQLSVLAE SKTGDRAGMW  420
HHKQNDIMSN TISRNHTEGS WLSSPCSNCP SHLLHDTTDE SKSVSAWPVS QSQVSMLNID  480
CALNQVDKDH QVETATTSYR LFGIDLIDHS KNSTAVGKPS SHAVNITAGT AEVSSSMLSS  540
SDTGHKSDTS KEASPSMERK QELQQVTPKD GQSKQTCIRS RIKVQMQGVA VGRAVDLTMF  600
NGYDQLIDEL EELFEIKGQL QNRNKWKVIF TDNDGDKMLV GDDPWPEFCN VVRRIFICSS  660
EDVKKMKSGS KLPFSSSIEE GTIISSDTTE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1651335713357Auxin response factor 1
4ldw_A1e-1651335713357Auxin response factor 1
4ldw_B1e-1651335713357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572936.10.0auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3EDA70.0A0A1S3EDA7_CICAR; Auxin response factor
STRINGXP_004506577.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9