PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572837.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 978aa MW: 111459 Da PI: 7.6157

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.5	2.2e-10	200	265	15	81
trihelix 15 remeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +++e ++rgk ++ + +ev++++r++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y XP_012572837.1 200 NQTEFGMSRGKTRADKDKEVAEFLRRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 265 45666778999********************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.71E-17	797	956	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.3E-8	817	919	No hit	No description
CDD	cd00180	7.65E-16	817	952	No hit	No description
Gene3D	G3DSA:1.10.510.10	6.8E-4	924	955	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence Send to blast
MVIDKGDTSK KQHQQTQSSP KATLIESTRP QIVNVVSGST RFISSPLYVS TSATTSSPFE 60 QQQQFETTLN TTKRPRYSGQ WKLLPSPTQQ QQKSSQINIL PTESTTPSPS NPQHHQQQQQ 120 QIHTTASSSD TTSSPSHSPI PILSEGNKLL QESEQVHQQL RKGKYVSPVW KPNEMLWLAR 180 AWKEQYQTGS DSSSKTEQKN QTEFGMSRGK TRADKDKEVA EFLRRHGVNR DAKTAGTKWD 240 NMLGEFRKVY EWERGGEREQ VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SMFMGSRMRS 300 SHGRTSSNFV FGDENRTRSL PPPRPFKDDD LPLSARAKQL TMTSGGEAFF HGHRGNLLGL 360 DSLLEISTPC SSSKELRRIG KIRMTWEESL SLWGEEGEVY RGRVKVQSSS FLHADEISFF 420 DDAMVPCPLE CFEDGSLKGF SVDRFVSGQQ VNVIGRRKSS SASSSGFAER VQPLTKPIPL 480 RSIVSLDFRD PTEYYMDCLL RVSSQQSLPP LFELKNHIQE PPHENFRFPL RKEVFEDLPQ 540 GKEFFFTTTS EPLDCRSIIY DIVGPIIRTN NNNNNNPSLL PFSSRDSFIG LWDDCINRVV 600 SRFCPDDFVI TRKPFSSISQ DTLLLQDEWP NVTGFVNNFC LWRGEECEEL KDNNIIQQNP 660 SSTIIQKLLW TYQDLPYILG YYAISNTVTF CALSKSQEGT IIRTDLHQVN LTTPYERFKV 720 LVPCFRIGVL LSMLSKHCCS NTKGNFVYSD FDRYSFGEGV IIEMTPNTSK RVFLEKRKWC 780 SVKEVYEILD HRIPHSEFLF KCNENDMSLV FKPRGIRMKP LNCEELVEAL KFVTKALVAL 840 HDLSFMHRDI RWENVMKRND REREWFVCGF DEAAGAPELN RKEEGGEKVE RGRHAPEMER 900 GLHGVKVDVW GVGYLIMTCG VVGVPKMMRE LMNCCMEQNP EQRPTAADCY HHLLQLQTSL 960 LSGGGGCGGS GGGGRGLM

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence Send to blast

MVIDKGDTSK KQHQQTQSSP KATLIESTRP QIVNVVSGST RFISSPLYVS TSATTSSPFE  60
QQQQFETTLN TTKRPRYSGQ WKLLPSPTQQ QQKSSQINIL PTESTTPSPS NPQHHQQQQQ  120
QIHTTASSSD TTSSPSHSPI PILSEGNKLL QESEQVHQQL RKGKYVSPVW KPNEMLWLAR  180
AWKEQYQTGS DSSSKTEQKN QTEFGMSRGK TRADKDKEVA EFLRRHGVNR DAKTAGTKWD  240
NMLGEFRKVY EWERGGEREQ VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SMFMGSRMRS  300
SHGRTSSNFV FGDENRTRSL PPPRPFKDDD LPLSARAKQL TMTSGGEAFF HGHRGNLLGL  360
DSLLEISTPC SSSKELRRIG KIRMTWEESL SLWGEEGEVY RGRVKVQSSS FLHADEISFF  420
DDAMVPCPLE CFEDGSLKGF SVDRFVSGQQ VNVIGRRKSS SASSSGFAER VQPLTKPIPL  480
RSIVSLDFRD PTEYYMDCLL RVSSQQSLPP LFELKNHIQE PPHENFRFPL RKEVFEDLPQ  540
GKEFFFTTTS EPLDCRSIIY DIVGPIIRTN NNNNNNPSLL PFSSRDSFIG LWDDCINRVV  600
SRFCPDDFVI TRKPFSSISQ DTLLLQDEWP NVTGFVNNFC LWRGEECEEL KDNNIIQQNP  660
SSTIIQKLLW TYQDLPYILG YYAISNTVTF CALSKSQEGT IIRTDLHQVN LTTPYERFKV  720
LVPCFRIGVL LSMLSKHCCS NTKGNFVYSD FDRYSFGEGV IIEMTPNTSK RVFLEKRKWC  780
SVKEVYEILD HRIPHSEFLF KCNENDMSLV FKPRGIRMKP LNCEELVEAL KFVTKALVAL  840
HDLSFMHRDI RWENVMKRND REREWFVCGF DEAAGAPELN RKEEGGEKVE RGRHAPEMER  900
GLHGVKVDVW GVGYLIMTCG VVGVPKMMRE LMNCCMEQNP EQRPTAADCY HHLLQLQTSL  960
LSGGGGCGGS GGGGRGLM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572837.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027191089.1	0.0	uncharacterized protein LOC101511257
TrEMBL	A0A3Q7XBZ1	0.0	A0A3Q7XBZ1_CICAR; uncharacterized protein LOC101511257
STRING	XP_004506307.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-09	Trihelix family protein