PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572776.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 807aa    MW: 89813.7 Da    PI: 6.9695
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23172273199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_012572776.1 172 FCKTLTVSDTSTHGGFSVPRRAAEDCfppldyKLQRP-SQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGEN 263
                     99****************************9977754.569************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_012572776.1 264 GELRLGIRRA 273
                     999****996 PP
2Auxin_resp118.65.1e-39298380182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stks+F+v+Y+Pras++eFvv+++k++k++k++vs+G+Rfk++fe+++s+err+ sG+ +g+sdldp+rWp+SkWr+L
  XP_012572776.1 298 VANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKSPVSIGTRFKIRFEMDESPERRCnSGMLIGISDLDPYRWPKSKWRCL 380
                     689*******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-42164283IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-39166283IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-22170272No hitNo description
SMARTSM010197.5E-24172274IPR003340B3 DNA binding domain
PfamPF023622.6E-21172273IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985172274IPR003340B3 DNA binding domain
PfamPF065075.1E-33298380IPR010525Auxin response factor
PfamPF023092.6E-7669763IPR033389AUX/IAA domain
PROSITE profilePS5174520.544679761IPR000270PB1 domain
SuperFamilySSF542772.62E-9681758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MEIDLNHEVM MTEVENKNAL CIKECEKVSC CCCVCSLSPS TCSSSTSSTS PIVVSSSYLE  60
LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASFSPFTSLE IPTFDLQPQI FCRVVNIQLL  120
ANKENDEVYT QVTLLPQAEL AGMHMEAKEV EELEADEEGN EGLPTKSTPH MFCKTLTVSD  180
TSTHGGFSVP RRAAEDCFPP LDYKLQRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG  240
WSIFVNQKNL VSGDAVLFLR GENGELRLGI RRAVRPRNGL PESIVGKQNC YPNFLSSVAN  300
AISTKSMFHV FYSPRASHAE FVVPYQKYVK SIKSPVSIGT RFKIRFEMDE SPERRCNSGM  360
LIGISDLDPY RWPKSKWRCL MVRWDEDIET NHQDRVSPWE IDPSSSLPPL SIQSSPRLKK  420
PRTGLQVASP SHLITAGGSG MMGFEESIRS SKVLQGQENA GFMSLYYGCD KLTNKPGFEL  480
SSSSHQNLAL TGVGKAVTSS EHMNAHPFSY AAGFMETNSF PRVLQGQEIC KLKSLTQKVD  540
SNIGAWGNNP NVSCTNFNLR QATKPNFQSA YFPYGDIYKN GQANMFTSKH MNFQSDNVSF  600
STPSILAGNI RNEVGRSELN LPNEDKLQDN ISASVSLGAT NIKVPNDNNV KGKVNSCKLF  660
GFPLSAETSS QNLQNTAKRS CTKVHKQGSL VGRAVDLSRL NCYVDLLSEL EKLFGMEGLL  720
RDHDKGWRIL YTDSENDIMV VGDDPWHEFC DVVSKIHIYT KGEVEKMTFG MTNDDTHSSL  780
EQAPVIMEPS KSSSVSQTDY SPTVVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-120424062357Auxin response factor 1
4ldw_A1e-120424062357Auxin response factor 1
4ldw_B1e-120424062357Auxin response factor 1
4ldy_A1e-120424062357Auxin response factor 1
4ldy_B1e-120424062357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572776.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A1S3ECU60.0A0A1S3ECU6_CICAR; Auxin response factor
STRINGXP_004505967.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]