PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572743.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 483aa MW: 56346.5 Da PI: 9.7211

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	349.6	4.8e-107	106	480	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl c + v +d+ +a++lL+++++++sp gd++qRl +yf+++L arl + +++ +++s+ ++ + ++ l+a+++ + P+ k+++ XP_012572743.1 106 LRNLLLLCSQSVYVNDTINANELLKQINQHSSPFGDATQRLSHYFANGLDARLIGDGTGAQTFFSSSSFKRITAAKFLKAYQVHYISPPFKKLAY 200 6899*******************************************************99**************************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN++I++ ++++e +HiiDf+i +G+QWp L++ L++R+ gpp+lRiTg++ p +g e+++etg+rLak++++++vpfefn++++ ++e+ XP_012572743.1 201 FFANKMIMKVAAKAESLHIIDFGILYGFQWPMLIKFLSNREYGPPKLRITGIEFPLPGfrPMERIQETGRRLAKYCKRFNVPFEFNAIASWNWET 295 ***************************************************99999***********************8888 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L++k++E+++Vn+ ++ ++lldes + +s+r++vL+l+++++P++++ + + ++ns+ F + f eal ++sa++d++++ + re+e+r+ XP_012572743.1 296 IRVEDLKIKSNEVVVVNSLMRFKNLLDESIEANSPRSAVLHLIRKINPDIFTQSIVNGSYNSPFFSTWFREALFHFSAIYDMFDTVIQRENEWRM 390 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ +e +gre++nvvaceg er+er et+++W+ r ++aGFk++pl+++ +++ ++ lr+ + + + +e+s+++++gWk+r L++ ++W XP_012572743.1 391 MIQKESVGREAMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLNSELMANFRTELRQWYHKDFVFDEDSNWMLQGWKGRILYASTCW 480 **********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.42	80	461	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-104	106	480	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MSRRRRRDSF RIVFKIVFAG QDSFTVSGSS FNEGILDILP IIFLSSASAE MFDKALLNVE 60 HLPHCNEQNY WLQNEQANTE KQQPSSNRRK ACPKKQDRKH EETVDLRNLL LLCSQSVYVN 120 DTINANELLK QINQHSSPFG DATQRLSHYF ANGLDARLIG DGTGAQTFFS SSSFKRITAA 180 KFLKAYQVHY ISPPFKKLAY FFANKMIMKV AAKAESLHII DFGILYGFQW PMLIKFLSNR 240 EYGPPKLRIT GIEFPLPGFR PMERIQETGR RLAKYCKRFN VPFEFNAIAS WNWETIRVED 300 LKIKSNEVVV VNSLMRFKNL LDESIEANSP RSAVLHLIRK INPDIFTQSI VNGSYNSPFF 360 STWFREALFH FSAIYDMFDT VIQRENEWRM MIQKESVGRE AMNVVACEGL ERVERPETYK 420 QWQVRNTRAG FKQLPLNSEL MANFRTELRQ WYHKDFVFDE DSNWMLQGWK GRILYASTCW 480 VPS

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MSRRRRRDSF RIVFKIVFAG QDSFTVSGSS FNEGILDILP IIFLSSASAE MFDKALLNVE  60
HLPHCNEQNY WLQNEQANTE KQQPSSNRRK ACPKKQDRKH EETVDLRNLL LLCSQSVYVN  120
DTINANELLK QINQHSSPFG DATQRLSHYF ANGLDARLIG DGTGAQTFFS SSSFKRITAA  180
KFLKAYQVHY ISPPFKKLAY FFANKMIMKV AAKAESLHII DFGILYGFQW PMLIKFLSNR  240
EYGPPKLRIT GIEFPLPGFR PMERIQETGR RLAKYCKRFN VPFEFNAIAS WNWETIRVED  300
LKIKSNEVVV VNSLMRFKNL LDESIEANSP RSAVLHLIRK INPDIFTQSI VNGSYNSPFF  360
STWFREALFH FSAIYDMFDT VIQRENEWRM MIQKESVGRE AMNVVACEGL ERVERPETYK  420
QWQVRNTRAG FKQLPLNSEL MANFRTELRQ WYHKDFVFDE DSNWMLQGWK GRILYASTCW  480
VPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-49	95	482	8	380	Protein SCARECROW
5b3h_A	8e-49	95	482	7	379	Protein SCARECROW
5b3h_D	8e-49	95	482	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572743.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027191795.1	0.0	LOW QUALITY PROTEIN: scarecrow-like protein 14
Swissprot	Q9XE58	1e-169	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A3Q7YG84	0.0	A0A3Q7YG84_CICAR; LOW QUALITY PROTEIN: scarecrow-like protein 14
STRING	XP_004505906.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-172	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]