PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572738.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 742aa    MW: 83851.4 Da    PI: 6.2655
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.4e-1123697391373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+ vss+d +   +lL+++++++sp gd  qRla++f++AL+arla++++++y al +++ts    ++ ++a++++  ++P+ k++ 
  XP_012572738.1 369 LRTMLVRCAQSVSSDDRSTSLELLKQIRQHSSPLGDGSQRLAHCFANALEARLAGTGTQIYTALYSKRTS---AADMVKAYQMYISACPFKKLAI 460
                     5789************************************************************999999...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN++Il+ +++ e++Hi+Df+i +G+QWpaL+  L++Rp+gpp+lR+Tg++ p++g   +e+++etg rLa+++e+++vpfefn+ +a+++e+
  XP_012572738.1 461 IFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGfrPAERVQETGLRLARYCERFNVPFEFNA-IAQKWET 554
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E l+ n+  + ++llde+v l+s+rd+vLkl+++ +P +++++  + ++n++ F++rf eal +ys++fd l+ +++ e+  r 
  XP_012572738.1 555 VKVEDLKIQRNELLVMNCLCRFKYLLDETVVLNSPRDAVLKLIRKANPSIFIHTTVNGSYNAPFFVTRFKEALFHYSTMFDVLDINVACEDPMRL 649
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+e++gre++n +aceg++r+er et+++W+ r  +aGFk++pl+++  ++ ++ lr v+   +++ e+ +++++gWk+r +++ S+W
  XP_012572738.1 650 MFEKEFFGREVMNTIACEGSQRVERPETYKQWQVRNIRAGFKQLPLDKQLINKLRCKLRDVYHSDFMLVEDGNCMLQGWKGRIVYASSCW 739
                     **************************************************************777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.045343720IPR005202Transcription factor GRAS
PfamPF035144.7E-110369739IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MDPRFNSNYT NGFTLDVENQ TFEFMDNPFL LPLNSNNTQN PTSTTTTTTT EEDSPLDETD  60
FSTTVLRYIN QMLMEENMEK KPCMFHDSLA LQAAEKSFYD VIGETYPSSS IQNHHNVESP  120
DDSLSSNFSS YSNCGTNSTT NSVESCWSSF DFSEYKPSIL QTTFPSDFVF QASSMNGTSS  180
SSSSSNFNVT TNNGFLVSSR DGFCDSNLLS KSESVLQFER GVEEANKFLP KVNPLVIDLK  240
KNSFVPSFRK VSQEVVVKTE SNEREHFSPE SRGRKNHERE DEMDFQDERS NKQSAVYTDD  300
GSELSELFDN VLLGVCSGCG NRGAPTCGSK EEQPNGTDVS VQQKEEVKGS GGGKSRAKKQ  360
GNIKGVVDLR TMLVRCAQSV SSDDRSTSLE LLKQIRQHSS PLGDGSQRLA HCFANALEAR  420
LAGTGTQIYT ALYSKRTSAA DMVKAYQMYI SACPFKKLAI IFANHTILNL AKEVETLHIV  480
DFGIRYGFQW PALIYRLSKR PGGPPKLRLT GIELPQPGFR PAERVQETGL RLARYCERFN  540
VPFEFNAIAQ KWETVKVEDL KIQRNELLVM NCLCRFKYLL DETVVLNSPR DAVLKLIRKA  600
NPSIFIHTTV NGSYNAPFFV TRFKEALFHY STMFDVLDIN VACEDPMRLM FEKEFFGREV  660
MNTIACEGSQ RVERPETYKQ WQVRNIRAGF KQLPLDKQLI NKLRCKLRDV YHSDFMLVED  720
GNCMLQGWKG RIVYASSCWV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4937574125380Protein SCARECROW
5b3h_A5e-4937574124379Protein SCARECROW
5b3h_D5e-4937574124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572738.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S3EBE20.0A0A1S3EBE2_CICAR; scarecrow-like protein 14
STRINGXP_004505854.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]