PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 16522 Da PI: 9.946 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ XP_012572733.1 81 FTCRKCGKPLAVKGDWRTHEKNC 103 89*****************9987 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0017 | 110 | 126 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 +Cg F++k +Lk Hi+ XP_012572733.1 110 ICGSDFKHKRSLKDHIK 126 8**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.82E-5 | 66 | 101 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MEEEDEEGIL MERMHLWGHS SQYRRGLDSL KRTHPRPLLD IPCYCCSKGC KNNIEHPRPK 60 PLKDFRTLQT HYKRKHGSKP FTCRKCGKPL AVKGDWRTHE KNCGKRWLCI CGSDFKHKRS 120 LKDHIKAFGF GHSPFSSSSD GI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 32 | DSLKRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572733.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572733.1 | 1e-102 | protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8VWG3 | 1e-69 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A1S3EBD7 | 1e-100 | A0A1S3EBD7_CICAR; protein TRANSPARENT TESTA 1-like | ||||
STRING | XP_004505848.1 | 3e-94 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 7e-67 | C2H2 family protein |
Publications ? help Back to Top | |||
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