PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572685.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HSF

Protein Properties

Length: 494aa MW: 55088.6 Da PI: 4.8343

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	118	5.8e-37	13	105	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw +n+n+f+vl++++f+k++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+k+ll++ XP_012572685.1 13 FLSKTYDMVDDSSTNSIVSWGNNNNTFIVLNSTDFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHEGFLRGQKQLLKT 98 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+ks+ XP_012572685.1 99 ISRRKSA 105 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-57	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.4E-33	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	9.4E-38	11	102	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.4E-19	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.0E-31	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-19	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MTAGSMNYVL PPFLSKTYDM VDDSSTNSIV SWGNNNNTFI VLNSTDFSKH ILPKYFKHNN 60 FSSFVRQLNT YGFRKVDPDR WEFAHEGFLR GQKQLLKTIS RRKSAHANGN SQESSKVQNS 120 SVGACVEVGK FGLDEEVERL KRDKNVLMQE LVKLRQQQQT TDNQLQNVGQ RVQVMEQRQQ 180 QMMSFLAKAM HSPGFMAQFA QQQNESNRHV AGGKKRRLQR QEEDSLATKS LHNPLDGCVV 240 KYQSPINEAA KALFSQMLQM NNSTRTESSV KNFDTFLIDD VPSAIPLDSS SSSTQVSGVT 300 LSEVPPISGQ SCMAVESQFP VSCMTNSMSE VQSSPAVLTN CVKAAEFPEL TAHNCQDNVL 360 DFSKVQGLVT ESSFMNPDQN FVGSVAQNEG ELDVMSAVLD GTQSLEADAF SPDVNGISKL 420 PGINDEFWEL FFMPSPLTGD TDEIEGSSLG YDLTKDQELS LEKEIQQEKM EKKQHMDHLT 480 QQMELLASDS SLCI

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MTAGSMNYVL PPFLSKTYDM VDDSSTNSIV SWGNNNNTFI VLNSTDFSKH ILPKYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFAHEGFLR GQKQLLKTIS RRKSAHANGN SQESSKVQNS  120
SVGACVEVGK FGLDEEVERL KRDKNVLMQE LVKLRQQQQT TDNQLQNVGQ RVQVMEQRQQ  180
QMMSFLAKAM HSPGFMAQFA QQQNESNRHV AGGKKRRLQR QEEDSLATKS LHNPLDGCVV  240
KYQSPINEAA KALFSQMLQM NNSTRTESSV KNFDTFLIDD VPSAIPLDSS SSSTQVSGVT  300
LSEVPPISGQ SCMAVESQFP VSCMTNSMSE VQSSPAVLTN CVKAAEFPEL TAHNCQDNVL  360
DFSKVQGLVT ESSFMNPDQN FVGSVAQNEG ELDVMSAVLD GTQSLEADAF SPDVNGISKL  420
PGINDEFWEL FFMPSPLTGD TDEIEGSSLG YDLTKDQELS LEKEIQQEKM EKKQHMDHLT  480
QQMELLASDS SLCI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	3	105	12	123	Heat shock factor protein 1
5d5u_B	1e-25	2	102	20	129	Heat shock factor protein 1
5d5v_B	1e-25	2	102	20	129	Heat shock factor protein 1
5d5v_D	1e-25	2	102	20	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572685.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143921	0.0	BT143921.1 Medicago truncatula clone JCVI-FLMt-20B13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572685.1	0.0	heat stress transcription factor A-1b isoform X2
Swissprot	Q84T61	1e-144	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1S3EA34	0.0	A0A1S3EA34_CICAR; heat stress transcription factor A-1b isoform X2
STRING	XP_004505594.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-112	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]