PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572665.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 338aa    MW: 38432.3 Da    PI: 6.5108
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
   XP_012572665.1 15 KGPWTPEEDRILVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.75.6e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++ lG++ W+tIa +++ gRt++++k++w+++l
   XP_012572665.1  68 RGKFTEEEEQSIINLHAVLGNK-WATIAGHLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-26665IPR009057Homeodomain-like
PROSITE profilePS5129419.0391062IPR017930Myb domain
SuperFamilySSF466892.75E-3212109IPR009057Homeodomain-like
SMARTSM007175.1E-161464IPR001005SANT/Myb domain
PfamPF002491.4E-171562IPR001005SANT/Myb domain
CDDcd001671.13E-121762No hitNo description
PROSITE profilePS5129427.06263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2766117IPR009057Homeodomain-like
SMARTSM007175.4E-1667115IPR001005SANT/Myb domain
PfamPF002493.7E-1668113IPR001005SANT/Myb domain
CDDcd001676.85E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMGRTPCCDE RGLKKGPWTP EEDRILVDYI EKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FTEEEEQSII NLHAVLGNKW ATIAGHLPGR TDNEIKNFWN THLKKKLLQM  120
GLDPVTHRPR IDHLNLMSNL QQILAANILN TTFPNTLDNA LRLQSDATQL AKLQLLQNIL  180
QIQILGANTP NTSNLELLNS FGNSSSPLQE SFLNELLGLN YQTKFQNVYD GYFPSQQNQT  240
NFQSFEAPPQ MQPPQKVDEL SFDHATNSSS TTTPLNSLPN LVSVSPECSA VKQIKENKRN  300
QNECSISNST TFEMLGDFMY EEVSDVYWKD LLDQESNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572665.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505589.10.0transcription factor MYB53-like
SwissprotQ9S9Z26e-87MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1S3EA150.0A0A1S3EA15_CICAR; transcription factor MYB53-like
STRINGXP_004505589.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-91myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]