PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572659.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 477aa    MW: 52806.1 Da    PI: 9.0146
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-056080323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cgk F r  nL+ H r H
  XP_012572659.1 60 CETCGKGFQRDQNLQLHRRGH 80
                    *******************88 PP
2zf-C2H213.50.00022134156123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_012572659.1 134 WKCEKCSKRYAVQSDWKAHSKTC 156
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-65780No hitNo description
Gene3DG3DSA:3.30.160.608.5E-55880IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5935880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-6129154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLKKMDEIEI TNGFPQNSQG TSNNPPTLKR KRNLPGNPDP EAEVIALSPK TLMATNRFLC  60
ETCGKGFQRD QNLQLHRRGH NLPWKLKQRT NKEAKKRVYV CPEKTCVHHD PSRALGDLTG  120
IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTIFS RRDSFITHRA  180
FCDALAEETA RVSAASEINN NISYNNIMGT SLVPNNNMAN HFSSIFKPID ETTNIQTRGL  240
SLWMSTQSSQ PHETMITTTN GNNLHEIHHQ LGSSTNTSSR GILYSGNIEN PLVQCSNTNP  300
PPNSNNYHLN WVFGTKLPSN CSEELITSTT TSLPLRNNIN IDDVPRSASL YSSQHQLQPH  360
QNQTSNMSAT ALLQKAAQIG ATTSTDPSFL GSLGLKCSNT TTNIDGNKFG GGMYGSSSLL  420
ISLASGEDRN SGCDLSQMHP SKRRHVQSEE NGGGQTRDFL GVGVQTICHP SSINGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-37130201372Zinc finger protein JACKDAW
5b3h_F8e-37130201372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572659.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572659.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-149IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A1S3EBB40.0A0A1S3EBB4_CICAR; zinc finger protein MAGPIE-like
STRINGGLYMA12G13810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-143C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]