PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27402.7 Da PI: 9.7535 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 32 | 81 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_012572611.1 32 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 81 79***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-41 | 24 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.683 | 24 | 84 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-33 | 25 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.97E-45 | 25 | 99 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 26 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-33 | 26 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-27 | 33 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-33 | 46 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-33 | 61 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-21 | 107 | 189 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.121 | 110 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMDESLQGMD FQNQSMSDSP QRKIGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV 60 LCDAEVALIV FSSRGRLYEY ANNSVKATIE RYKKACSDSS GTGSASEANA QFYQQEADKL 120 RAQISNLQNN NRQMMGESLG SMTAKELKNL EGKLEKGISR IRSKKEIDLH NNNQLLRAKI 180 AESERNHHNM SVLPGGTSYE SMQSQHQQQQ QQYDSRGYFQ VTGLQPSSQY ARQDQMSLQL 240 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-20 | 24 | 92 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572611.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF159804 | 0.0 | KF159804.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSa (AGa) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572611.1 | 1e-179 | floral homeotic protein AGAMOUS isoform X8 | ||||
Swissprot | Q43585 | 1e-118 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A1S3ECE0 | 1e-177 | A0A1S3ECE0_CICAR; floral homeotic protein AGAMOUS isoform X8 | ||||
STRING | XP_004485952.1 | 1e-157 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-93 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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