PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26753.4 Da PI: 9.7091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.5e-14 | 45 | 91 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h + E++RR+++N ++ Lr+l+P++ +K + a++L A+eYI++L XP_012572428.1 45 TEHFATEKQRREQLNGKYKILRSLIPNP-----TKIDRASVLGDAIEYIREL 91 68**************************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.51E-15 | 40 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.307 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-11 | 45 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-13 | 45 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-10 | 47 | 91 | No hit | No description |
SMART | SM00353 | 9.6E-12 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSSRNGSLFG GGDEMEGDGS QLDMGVLEFN RVTASVGKGR GGKATEHFAT EKQRREQLNG 60 KYKILRSLIP NPTKIDRASV LGDAIEYIRE LVRTKNELTL LVERKRHGRE MSKRLKTEDD 120 AAESCNIKPF GDADGSIRTS WLQRKSKDSA VXVRIIDNDV TIKLIQRKKV NCLLFVSKVL 180 DELQLELYHV AGGFVGEYFS FLLKSKVIEG SSVYPSAIAN RVIDVLDTQY AAVVPILSRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572428.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009066 | 7e-65 | AP009066.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256, complete sequence. | |||
GenBank | BT136391 | 7e-65 | BT136391.1 Lotus japonicus clone JCVI-FLLj-19K6 unknown mRNA. | |||
GenBank | FJ379760 | 7e-65 | FJ379760.1 Lotus japonicus putative basic helix-loop-helix protein BHLH14 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191036.1 | 1e-173 | LOW QUALITY PROTEIN: transcription factor EAT1-like | ||||
Swissprot | Q8GX46 | 3e-66 | BH091_ARATH; Transcription factor bHLH91 | ||||
TrEMBL | A0A3Q7Y126 | 1e-172 | A0A3Q7Y126_CICAR; LOW QUALITY PROTEIN: transcription factor EAT1-like | ||||
STRING | XP_004504639.1 | 1e-151 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-68 | bHLH family protein |
Publications ? help Back to Top | |||
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