PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27343.1 Da PI: 9.9463 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.5e-31 | 18 | 67 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_012572289.1 18 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 67 79***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.515 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-40 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-32 | 11 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.99E-44 | 11 | 85 | No hit | No description |
PRINTS | PR00404 | 7.8E-33 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-26 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-33 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-33 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.6E-27 | 92 | 180 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.184 | 96 | 186 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MMPDSPQRKI GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA EVALIVFSTR 60 GRLYEYANNS VKASIERYKK ACSDSSGCKS ASETNAQYYQ QEAAKLRVQI SNLQNHNRQM 120 MGEALSNMSG KDLRNLETKL EKGISRIRSK KNEMLFAEIE YMQKKEIELH NSNQVLRAKI 180 SESERSQHNV NVLSGGTNFE CMQTPQQFDP RNYFQVTGLQ PNNNQYASAH MFIAKAAIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-20 | 10 | 78 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572289.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF159805 | 0.0 | KF159805.1 Medicago truncatula cultivar Jemalong A17 MADS-box transcription factor AGAMOUSb (AGb) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572289.1 | 1e-179 | floral homeotic protein AGAMOUS-like isoform X2 | ||||
Swissprot | Q40872 | 1e-121 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A1S3EA91 | 1e-177 | A0A1S3EA91_CICAR; floral homeotic protein AGAMOUS-like isoform X2 | ||||
STRING | XP_004504255.1 | 1e-168 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-108 | MIKC_MADS family protein |