PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572279.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 402aa    MW: 45780.5 Da    PI: 5.6011
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d++ + ++sws n +sfvv+d+ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +gk +l+++
  XP_012572279.1  14 FLAKTYEMVDDSSSDPIVSWSLNDKSFVVWDPAEFARILLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFSNDDFVRGKPHLMKN 99 
                     9********************999****************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_012572279.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.05E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDEAHGSSSS LPPFLAKTYE MVDDSSSDPI VSWSLNDKSF VVWDPAEFAR ILLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFSNDDFV RGKPHLMKNI HRRKPVHSHS LQNLQAQAPL  120
SESERQSLND EIEKLKHDKE QLMMELKRHQ LEWQTYEIQI HCTKDRLEKL EQKQQKFVSS  180
VSQVLQKPVM IAVNLLPLTE TMDRKRRLPR SGCFNNEAIM EDGIETSVGL PRDNAEGXLS  240
FDIKCREIGS AXSHPWYFGX TIAHEAGDNF VHARSNIDLD ESTCCADSLS ISSGQLDVEV  300
QPKSSGIDMN SEPTAAPAVV ALKEQPVGIT TAATGVNDVF WEQFLTEDPG ASEAHEVQSE  360
RKDSNSRKNE GKPSDHGKFW WNMRKANNLP EQMGRVDQVE KI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-22910324129Heat shock factor protein 1
5d5v_B5e-22910324129Heat shock factor protein 1
5d5v_D5e-22910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572279.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352261.10.0heat stress transcription factor A-4a
SwissprotQ9FK721e-107HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A3Q7K8I90.0A0A3Q7K8I9_CICAR; heat stress transcription factor A-4a
STRINGAET043230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-102HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]