PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572256.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 807aa MW: 89935.5 Da PI: 9.027 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 138 | 158 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa G C++G+ C+F H XP_012572256.1 138 PCRDFAV-GNCRRGSHCHFLHH 158 8******.*************6 PP | |||||||
2 | zf-CCCH | 18 | 5.3e-06 | 261 | 282 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G C+F+H+ XP_012572256.1 261 TPCK-FFAFGNCRNGKDCRFSHD 282 5899.8888*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.333 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-4 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 137 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.174 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.05 | 193 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.6E-4 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 258 | 284 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-5 | 260 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MNLNLHLRSW RSFTGVTNSN NSRRPYLASN DMIKPRMEFL SKEPFSGGRG SNRDDVRNED 60 YRVFDATIAQ GTDGSYDMDI SPGFEEWKNR KHGQSAKDDY GSAMSRRSRS HSRSPPRGFK 120 YSAVDERNRT RAGRTAQPCR DFAVGNCRRG SHCHFLHHDN QSYEDSRESR HRQDGPRYSN 180 SRESGDYSLA SQRSNEACIN FAKGRCRTGE SCKYVHHGNS DGFDNKVSAD ESSRQREIDR 240 RRSDNSFKQG GQHYPNHSGN TPCKFFAFGN CRNGKDCRFS HDRQAFTSPI GRLRDDRSRS 300 NQGEDQVLGR PKISDSVIPN GRPRDDRWGS DGSMADVGKV WDGPKQNDLV AVSDTAKMVE 360 DNKNGIIGAA EPGFIAWPMS DRRDHSFDKN IVHNESPFSI DKKEGNCSKA ENATDNILIS 420 QSVGGGIWPG DETMSPDWNY GARSSSHVND EHGQNKQQVA PGQGLIQNSQ NISASQVVGQ 480 SQTTVSIVTP RARIIESIQN QEHSTEKNYI VEPNTMNASL SQISSRNTPT QNVVSKEQLA 540 QLSCLSASLA HILGTDQKLP QLHSTSNSYD AKDTLFGSKI EGSGDPVSLT FIKPDPAIGL 600 KQYDTMCDSM GPKNTNASVV PPTFSPIKIP KNAVEIPPQL SNLGQSFDDS RKTAISEEPH 660 VKNEHLFHLQ LCENIKVQNE TSKIVAEEKP SSQSENKITK ENSPLGNMDQ NVGPEDAKKT 720 KDAKGTRAFK ISLVELIKEL LKPTWKDGKI TKEDYKAIVK KVTDKVTGTV QRVHIPQTQE 780 KIDRYLSVSK PKLIKLVQAY VEKAQKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572256.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572256.1 | 0.0 | zinc finger CCCH domain-containing protein 55 isoform X3 | ||||
TrEMBL | A0A1S3EBA1 | 0.0 | A0A1S3EBA1_CICAR; zinc finger CCCH domain-containing protein 55 isoform X3 | ||||
STRING | XP_004503947.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-13 | C3H family protein |