PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572231.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 699aa    MW: 78091 Da    PI: 4.5626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-10549592146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+W++++ e +++av+q+G++ ++ I + +   +t+ q+k+++ k
   XP_012572231.1 549 RGKWSKQDTEVFYEAVRQFGTD-FSMIQQLFH-DKTRHQIKLKYKK 592
                      89********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.9E-26542627No hitNo description
Gene3DG3DSA:1.10.10.601.7E-6545592IPR009057Homeodomain-like
PROSITE profilePS512939.133547595IPR017884SANT domain
SMARTSM007172.4E-7548596IPR001005SANT/Myb domain
SuperFamilySSF466894.26E-10550598IPR009057Homeodomain-like
CDDcd001671.75E-5551592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDLFDDLLSE TSSARVRPGA RFAPKAKSKH QPQKNVSASQ DVNNVNVASS SPTHNNDNEL  60
NNVEVIHNSL QDTLNAGFKN DSGDSNTAAL SESNIHSNFD SGEVGKGLLS EEIELDPFSN  120
VLPDSGTGNA HKFKPKIKPR PRVGKTSANT SASSSVMMEK SGITLSEDSR SLEEVIPSQP  180
DSLNVMPSEA LVDNGTRDWP SNFGKSTAET AEIFSELEVL DDFLNEAATG TDLNSFNMKG  240
AEENFVLPEY DNKSRSETQA GADLNPDCPI DNVYDYQTMK SGTDPTFEIP MHDGLANSTD  300
SPTLADSLQQ DGIGEKEDTS ERKKSPKKHK RSSVAAGMED KSGKTSRQPR KQSARKPAKN  360
SPLNEAIVDD DDPDPSYDAN RDELEENDEE DGVDYLSKKK KASTRPRKKS VAKNGKTSEK  420
RKKTNDDLEN ITKEPPKKFS HSSRRKKRCV DKALLDDEEL DHRTIPIRDV ILLADYRERL  480
AKKEAITSKT SSTNESMRGF LNEDDANNED ENFGSDDGSR DLDDDQANEK ITSTNPLINY  540
QSFMDKAPRG KWSKQDTEVF YEAVRQFGTD FSMIQQLFHD KTRHQIKLKY KKEERQHPLQ  600
LYDALNNRAT DLSFFQKVIE KQKQTSNKAE QDVRDASDFM PEDEVEDPPP GTKEEVTTTE  660
QDLIDVKDQD GSTAFQNPEQ SDDSDDDDLE KWSHYQSAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406422RKKSVAKNGKTSEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572231.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1674043e-45AC167404.11 Medicago truncatula clone mth2-9d11, complete sequence.
GenBankAC2024853e-45AC202485.8 Medicago truncatula clone mth2-176b2, complete sequence.
GenBankAC2035413e-45AC203541.4 Medicago truncatula clone mth2-20k1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572231.10.0transcription factor TFIIIB component B'' isoform X2
TrEMBLA0A1S3EB750.0A0A1S3EB75_CICAR; transcription factor TFIIIB component B'' isoform X2
STRINGXP_004504018.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-33MYB_related family protein