PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 532aa MW: 60138.7 Da PI: 7.1198 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l+ +++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_012572125.1 14 RGLWSPEEDDKLITYITSHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T++E++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ XP_012572125.1 67 RGRFTPDEEKLIITLHSVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.74 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.62E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.385 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-11 | 69 | 112 | No hit | No description |
Pfam | PF03501 | 3.9E-43 | 356 | 447 | IPR005326 | Plectin/S10, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDDKLITYIT SHGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPDEEKLIIT LHSVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKHS 120 LSTSSTTNIT QNLVHHNSNN KLEHFSIQEN NLATPIAKPS PFQETTLFSP TCPLFMFEPS 180 NNLQTEYFQI QESIGLNSET WNQIQSLPPP ISSTFTMDTL NYLPPLIENV ENMVPIKSCS 240 MEEKHGDRDH QVLECFQKQE MNNNIDEWVE THLQQQQQQC PSNFIFWDNI VIEGHDHHEL 300 GGGEEEVEPS NSSNIMGTNT VIFPFASSSF LGFIIPSTIN CGSFLSSPPL VVAMIISEKN 360 RKEICKYLFQ EGVCYAKKDF NLAKHPEIDV PNLQVIKLMQ SFKSREYVRE TFAWMHYYWF 420 LTNDGIEFLR TYLNLPSEIV PATLKKQAKP PGRPFGGPPG DRPRGPPRFE GERRFGGDRD 480 GYRGGPRGPA GEFGGDKGGA PADYRPSFGG PGGRPGFGRG SGGFGAPTSS DA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v7e_BK | 4e-76 | 354 | 508 | 1 | 156 | 40S ribosomal protein S10E |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572125.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572125.1 | 0.0 | transcription factor MYB86-like | ||||
TrEMBL | A0A1S3E8I7 | 0.0 | A0A1S3E8I7_CICAR; transcription factor MYB86-like | ||||
STRING | XP_004503677.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 6e-86 | myb domain protein 103 |