PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572125.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 532aa    MW: 60138.7 Da    PI: 7.1198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+ +++ +G g+W+ ++++ g+ R++k+c++rw +yl
   XP_012572125.1 14 RGLWSPEEDDKLITYITSHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP

2Myb_DNA-binding51.72e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T++E++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
   XP_012572125.1  67 RGRFTPDEEKLIITLHSVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-24664IPR009057Homeodomain-like
PROSITE profilePS5129416.74961IPR017930Myb domain
SuperFamilySSF466897.11E-2912108IPR009057Homeodomain-like
SMARTSM007172.5E-111363IPR001005SANT/Myb domain
PfamPF002494.0E-141461IPR001005SANT/Myb domain
CDDcd001676.62E-101761No hitNo description
PROSITE profilePS5129425.38562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002494.2E-1567111IPR001005SANT/Myb domain
CDDcd001671.98E-1169112No hitNo description
PfamPF035013.9E-43356447IPR005326Plectin/S10, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDDKLITYIT SHGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPDEEKLIIT LHSVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKHS  120
LSTSSTTNIT QNLVHHNSNN KLEHFSIQEN NLATPIAKPS PFQETTLFSP TCPLFMFEPS  180
NNLQTEYFQI QESIGLNSET WNQIQSLPPP ISSTFTMDTL NYLPPLIENV ENMVPIKSCS  240
MEEKHGDRDH QVLECFQKQE MNNNIDEWVE THLQQQQQQC PSNFIFWDNI VIEGHDHHEL  300
GGGEEEVEPS NSSNIMGTNT VIFPFASSSF LGFIIPSTIN CGSFLSSPPL VVAMIISEKN  360
RKEICKYLFQ EGVCYAKKDF NLAKHPEIDV PNLQVIKLMQ SFKSREYVRE TFAWMHYYWF  420
LTNDGIEFLR TYLNLPSEIV PATLKKQAKP PGRPFGGPPG DRPRGPPRFE GERRFGGDRD  480
GYRGGPRGPA GEFGGDKGGA PADYRPSFGG PGGRPGFGRG SGGFGAPTSS DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BK4e-76354508115640S ribosomal protein S10E
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572125.10.0transcription factor MYB86-like
TrEMBLA0A1S3E8I70.0A0A1S3E8I7_CICAR; transcription factor MYB86-like
STRINGXP_004503677.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.16e-86myb domain protein 103