PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572041.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 359aa    MW: 41008.3 Da    PI: 5.3031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.1e-36171082102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k y+++ed++++++isw+++g+sf+++++++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+k+++++         weF++++F +g+k+ll++
  XP_012572041.1  17 FLNKCYDMVEDHSTDSIISWTQRGDSFIISNHSQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDTDH---------WEFANENFIRGQKHLLKN 102
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_012572041.1 103 IRRRKH 108
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.6E-5713106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-3413106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-3714106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVKAASDNGS CCSVAPFLNK CYDMVEDHST DSIISWTQRG DSFIISNHSQ FSLTLLPNYF  60
KHNNFSSFVR QLNIYGFRKI DTDHWEFANE NFIRGQKHLL KNIRRRKHPH VADQQKTLPP  120
KESSEKPSQE AKNHSLWKEV ENLKSDRNSL TQELVKHKQH LESSESKLLI LSDRLDGMEK  180
NQQQMLSFLV MVVQCPGFMV QLLHPKENNW RVAAENLLDQ GKQDDTPVSS DRMIVKYKPP  240
VGERLKPVVP QSPKQPEPEL SADGLKDLCI SSEFLKLLLD EKLSPLDNPS PFLVPDFPDD  300
GSWEQLFLGS PFLENAENTD HENEGATVSG MEMEPTISEM PNERSAFEAM IVEMEKTQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-241310625129Heat shock factor protein 1
5d5v_B5e-241310625129Heat shock factor protein 1
5d5v_D5e-241310625129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572041.10.0heat stress transcription factor A-8
TrEMBLA0A1S3EAN70.0A0A1S3EAN7_CICAR; heat stress transcription factor A-8
STRINGXP_004503339.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.16e-79heat shock transcription factor A8