PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571810.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 826aa    MW: 92592.6 Da    PI: 7.0987
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23175276199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_012571810.1 175 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGMVWKFRHIYRGQPKRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 266
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_012571810.1 267 GELRLGIRRA 276
                     999****996 PP
2Auxin_resp113.42.1e-37301382182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+s ks+F+v+Y+Pras+++Fvv+++k++k+++++v++G+Rfkm+fe+++s+er   G+v+g+sdldp++Wp+SkWr+L
  XP_012571810.1 301 VANAISAKSMFHVFYSPRASNADFVVPYQKFVKSIRNPVTIGTRFKMKFEMDESPERYGGGIVTGMSDLDPYKWPKSKWRCL 382
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-42167285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-41169286IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-22173275No hitNo description
PROSITE profilePS5086313.31175277IPR003340B3 DNA binding domain
SMARTSM010192.2E-24175277IPR003340B3 DNA binding domain
PfamPF023621.7E-21175276IPR003340B3 DNA binding domain
PfamPF065074.9E-31301382IPR010525Auxin response factor
PROSITE profilePS5174522.336698782IPR000270PB1 domain
SuperFamilySSF542774.97E-10701777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MEIDLNDSVT EIEKKKKKTN NVSCNEGCDK SVCVCTLSSS SSSPTCSTSS CSSSAIVSSS  60
YVELWHACAG TLTSLPNKGN VVVYFPQGHL EQLSSFSPFS SLEMPTYDLH PQIFCRVVNV  120
QLLANKENDE VYTQVTLLPQ AELAGMFLDG KEAEGLEEHE EGNGKQYLQS QPHMFCKTLT  180
ASDTSTHGGF SVPRRAAEDC FPPLDYNQQR PSQELVAKDL HGMVWKFRHI YRGQPKRHLL  240
TTGWSIFVSQ KNLVSGDAVL FLRGENGELR LGIRRAARPR NGLPESIVGN KSCYPSFLSS  300
VANAISAKSM FHVFYSPRAS NADFVVPYQK FVKSIRNPVT IGTRFKMKFE MDESPERYGG  360
GIVTGMSDLD PYKWPKSKWR CLMVRWDEDI ETKHQDRVSP WEIDPSTSLP PLNIQSSRRL  420
KKLRTGLQAD SPGHLITDDR GFMDFDESVR SPKVLQGQEK TGFMSLYYGC DTITKQKEFD  480
INSLSHTNQF DINSLSHTNL VSTGARKITS SEFTRLRPSS YAGFTETNRF PRVLQGQEIC  540
PLSSLTGKVD LNLNAWGKTN VSYTNYNLDQ TTRPNFHSLG QQILHNAYLP YGDIRKACQG  600
SSMLCSRPTN FQLENLPFST SSAQKIGTMR NEVGLSSLTI PNEKNLQDNI SGATSLGEKM  660
RISNDENFKE KKVNACKLFG FFLSGETTSQ NLPNSAKRSC TKVHKQGSLV GRAIDLSRLS  720
SYNDLMSELE RLFGMEGLLR DPTKEWRVLY TDSENDIMVV GDDPWHEFCE MVSKIHIYTQ  780
EEVEKMTIGM MNDDNQSCLE QTPLIMEASK SSSVCQPDCS PTVVRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1136340822357Auxin response factor 1
4ldy_B1e-1136340822357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191276.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A3Q7Y1G80.0A0A3Q7Y1G8_CICAR; Auxin response factor
STRINGAES674420.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]