PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571729.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 411aa    MW: 47659.9 Da    PI: 9.4923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-17182228148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll+++v+++G + W+ Ia+ ++  R +kqc++rw+++l
   XP_012571729.1 182 KGQWTVQEDRLLIQLVEKYGLRKWSHIAQLFP-DRIGKQCRERWHNHL 228
                      799*****************************.*************97 PP
2Myb_DNA-binding50.16.2e-16236276345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eEd++l++a+ + G++ W+ Ia+ +  gRt++++k++w+
   XP_012571729.1 236 IWSEEEDKILIKAHSEIGNK-WAEIAKILA-GRTENSIKNHWN 276
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.181177232IPR017930Myb domain
SuperFamilySSF466892.73E-31179275IPR009057Homeodomain-like
SMARTSM007171.1E-16181230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-24183232IPR009057Homeodomain-like
PfamPF139212.7E-17185240No hitNo description
CDDcd001673.32E-15185228No hitNo description
PROSITE profilePS5129419.798233283IPR017930Myb domain
SMARTSM007172.5E-15233281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20233281IPR009057Homeodomain-like
CDDcd001674.86E-12237279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDLETKLTQI YASKSQHSQE NYYTKPNMKN HENTFGGFPN SSQGFMQDFN HINKFNVNGS  60
FFNPVSGVQT TNFDPCDNFT YDFKPNLLEN NGSGNAYAMD NFLYGGYGLN IFQRNNNKVE  120
MLVTNQQNYF PFNINSQKTK PLNFVVPDKI SCISPMNYYK RIGMNRNNAR KTEKVQKSNI  180
VKGQWTVQED RLLIQLVEKY GLRKWSHIAQ LFPDRIGKQC RERWHNHLRP DIKKDIWSEE  240
EDKILIKAHS EIGNKWAEIA KILAGRTENS IKNHWNATKR RQYSKRKCRS KYPRGTLLQE  300
YIKSLNLDKN PPKDYRRKST TNATLFKNKT SQITLSQTPH QQFCLNQCLV PSSDFDDVPD  360
FESLFQDGCS IDSLLEDIKS GSSVNLVDET DIMGSIMFGV EVKKEMVSLL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-421802822104C-Myb DNA-Binding Domain
1msf_C1e-421802822104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1312394e-86AC131239.20 Medicago truncatula clone mth2-18o15, complete sequence.
GenBankAC1575384e-86AC157538.19 Medicago truncatula clone mth2-150a17, complete sequence.
GenBankCT9542364e-86CT954236.4 M.truncatula DNA sequence from clone MTH2-3H12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190957.10.0transcription factor MYB98-like
SwissprotQ9S7L28e-92MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A3Q7YBY10.0A0A3Q7YBY1_CICAR; transcription factor MYB98-like
STRINGXP_004499811.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-94myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]