PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571721.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 449aa    MW: 51024.2 Da    PI: 4.4817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.4e-117683499
                    SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    k++ led+sg++W v++  ++ +g++ +++GW  F   +gL+ g  vvF  +++ +f   vk+++k
  XP_012571721.1  7 KKINLEDSSGQRWVVTV--SNDDGSFAFKEGWDVFSLNHGLDIGYLVVFNCINKLDF--DVKIYDK 68
                    68***************..*******************************8876666..8888887 PP
2B330.65.9e-103674411391
                     TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +g+l lpk+    h   +   + + + l+d+  r W v +      ++++lt+GW +F +an++k+ D++vF++++rse+ 
  XP_012571721.1 367 NGCLKLPKSLSLPHpkRL-RMKRTVVLLRDPLRRLWPVLY-----VEETWLTSGWLDFQRANNIKQADVCVFQVENRSERI 441
                     567888888888887522.33556899999**********.....45579***********************98877764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.34E-8167No hitNo description
PROSITE profilePS5086311.096169IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-12673IPR015300DNA-binding pseudobarrel domain
PfamPF023626.2E-8768IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-12771IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.869355449IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-12359444IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-8366444IPR003340B3 DNA binding domain
CDDcd100173.25E-8368444No hitNo description
Gene3DG3DSA:2.40.330.107.1E-11368441IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MPLLVNKKIN LEDSSGQRWV VTVSNDDGSF AFKEGWDVFS LNHGLDIGYL VVFNCINKLD  60
FDVKIYDKSI CERLEFSKKK NRKKRSRCRS GSPDRGCMED DLGGAQNSTE NDNDDGRGKT  120
MRTLEQIVDT CCITSRMYQN DVDFFNIDPM FEEVLGTGDA SYASKLELFG RNNSFGATDK  180
SAYDMTSALI LEENEENKSI MSNMEFQEYN FSENLGSDQA AVSGERFNGI TNLIDAQIHI  240
GEIKEVPMNM TPKMCSSNDQ LHATELPEGE FNQDNERHFE TASAVSCVVP TDNDCLRFNE  300
ISNLLDDQIH YGEVKEVPMD MTPKSCSLND QSNVTGLPET FKREFNEDIE SDFETAATVT  360
CVVLTDNGCL KLPKSLSLPH PKRLRMKRTV VLLRDPLRRL WPVLYVEETW LTSGWLDFQR  420
ANNIKQADVC VFQVENRSER IITVDIDHK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571721.10.0uncharacterized protein LOC101495675 isoform X2
TrEMBLA0A1S3E9P80.0A0A1S3E9P8_CICAR; uncharacterized protein LOC101495675 isoform X2
STRINGXP_004501829.10.0(Cicer arietinum)