PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_012571696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 923aa MW: 102777 Da PI: 4.796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.5 | 1.5e-18 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_012571696.1 37 KGQWTAEEDDILRKAVEQFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65 | 1.4e-20 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde ++d+v+++G++ W+tIa++++ gR +kqc++rw+++l XP_012571696.1 89 KGPWSKEEDETIIDLVNEYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.7 | 1.8e-15 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_012571696.1 141 KEAWTQEEELALIHAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.212 | 32 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 36 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 38 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-16 | 38 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-14 | 40 | 83 | No hit | No description |
PROSITE profile | PS51294 | 32.403 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-31 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-19 | 88 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-19 | 89 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-16 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-28 | 96 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.627 | 140 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-15 | 140 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 141 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.50E-12 | 143 | 183 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 143 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 923 aa Download sequence Send to blast |
MGSERKITAP SDTAEDSVQK IRALHGRTTG PTRRSTKGQW TAEEDDILRK AVEQFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELIKG PWSKEEDETI IDLVNEYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPSIN KEAWTQEEEL ALIHAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLT QLQNVPLVGN PNQPIASSSA RLQCSDDNGP RETEGEEISP 240 CSQESVNAGY FSSGGELNIV AIQNGEEYRP NEESNQPSCS EPYYMSLEDV TRQEVYSSQF 300 IEQKYSNEHG SSSTNADCEF NLHALPNISS LDFGQESSQL HNGSIAPSES HDMMIVPYGY 360 QSSSLDNVKG EQNMLITDDE CCRFLFSEAM SDECFSSGGV NNVDLSGCTS SLCQSSLPSG 420 GRMMMYTAEA NQLVASEDQQ FVSREHDGLI YANDNNRIED VVEDDNLKLV PVNSFDCGSD 480 TNQTCYPVDE KPDVHAKQEE TGGTLCYEPP RFPSLDIPFL SCDLIQSGDM QQEFSPLGIR 540 QFLMSPMNCL TPFRLWDSPS RIDSPNALLK SAAKTFINTP SIMKKKKRNR DLLSPLSDRR 600 MEKKHEIDVT STLISNFSRL DVMFDDIETQ GTEDDKENCG QACKVNEKGN SQEKIDQHPL 660 DADAKMKDDI DTAAEIVQQP SGVFVEHDMN DLSMYSPNQM GLKSDIFLTL SARNHKKSVS 720 RLNSPCVRLK EHERLSVSVT CVQSVCSSSG AGENTGDQTG NDGGFETCSI FGGTPFRKSF 780 ESPSAWKSPL VFSTFLSSPR IDTEITIEDY GCFFSPGGKG YDAIGWMKHI GEQTAAQYAN 840 AQEILEIETP KALPKYASGN DQENIDPHNQ HGNHSKSASN ALVEVERRML DFSECETPGK 900 GDKGKSSAIC VSSPSSYLLK SCR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-70 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-70 | 37 | 190 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_012571696.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501185.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_027190415.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | A0A1S3E9M1 | 0.0 | A0A1S3E9M1_CICAR; transcription factor MYB3R-1 isoform X1 | ||||
STRING | XP_004501185.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
---|---|---|---|
|