PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571696.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 923aa    MW: 102777 Da    PI: 4.796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l +av+q+ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_012571696.1 37 KGQWTAEEDDILRKAVEQFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP

2Myb_DNA-binding651.4e-2089135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde ++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
   XP_012571696.1  89 KGPWSKEEDETIIDLVNEYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP

3Myb_DNA-binding48.71.8e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_012571696.1 141 KEAWTQEEELALIHAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2123283IPR017930Myb domain
SMARTSM007171.0E-153685IPR001005SANT/Myb domain
PfamPF002498.3E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-223895IPR009057Homeodomain-like
SuperFamilySSF466898.61E-163893IPR009057Homeodomain-like
CDDcd001672.36E-144083No hitNo description
PROSITE profilePS5129432.40384139IPR017930Myb domain
SuperFamilySSF466893.15E-3186182IPR009057Homeodomain-like
SMARTSM007172.9E-1988137IPR001005SANT/Myb domain
PfamPF002497.1E-1989135IPR001005SANT/Myb domain
CDDcd001671.06E-1691135No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2896142IPR009057Homeodomain-like
PROSITE profilePS5129419.627140190IPR017930Myb domain
SMARTSM007174.0E-15140188IPR001005SANT/Myb domain
PfamPF002491.9E-13141184IPR001005SANT/Myb domain
CDDcd001677.50E-12143183No hitNo description
Gene3DG3DSA:1.10.10.601.6E-21143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MGSERKITAP SDTAEDSVQK IRALHGRTTG PTRRSTKGQW TAEEDDILRK AVEQFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELIKG PWSKEEDETI IDLVNEYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPSIN KEAWTQEEEL ALIHAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLT QLQNVPLVGN PNQPIASSSA RLQCSDDNGP RETEGEEISP  240
CSQESVNAGY FSSGGELNIV AIQNGEEYRP NEESNQPSCS EPYYMSLEDV TRQEVYSSQF  300
IEQKYSNEHG SSSTNADCEF NLHALPNISS LDFGQESSQL HNGSIAPSES HDMMIVPYGY  360
QSSSLDNVKG EQNMLITDDE CCRFLFSEAM SDECFSSGGV NNVDLSGCTS SLCQSSLPSG  420
GRMMMYTAEA NQLVASEDQQ FVSREHDGLI YANDNNRIED VVEDDNLKLV PVNSFDCGSD  480
TNQTCYPVDE KPDVHAKQEE TGGTLCYEPP RFPSLDIPFL SCDLIQSGDM QQEFSPLGIR  540
QFLMSPMNCL TPFRLWDSPS RIDSPNALLK SAAKTFINTP SIMKKKKRNR DLLSPLSDRR  600
MEKKHEIDVT STLISNFSRL DVMFDDIETQ GTEDDKENCG QACKVNEKGN SQEKIDQHPL  660
DADAKMKDDI DTAAEIVQQP SGVFVEHDMN DLSMYSPNQM GLKSDIFLTL SARNHKKSVS  720
RLNSPCVRLK EHERLSVSVT CVQSVCSSSG AGENTGDQTG NDGGFETCSI FGGTPFRKSF  780
ESPSAWKSPL VFSTFLSSPR IDTEITIEDY GCFFSPGGKG YDAIGWMKHI GEQTAAQYAN  840
AQEILEIETP KALPKYASGN DQENIDPHNQ HGNHSKSASN ALVEVERRML DFSECETPGK  900
GDKGKSSAIC VSSPSSYLLK SCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571696.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501185.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_027190415.10.0transcription factor MYB3R-1 isoform X1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A1S3E9M10.0A0A1S3E9M1_CICAR; transcription factor MYB3R-1 isoform X1
STRINGXP_004501185.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]