PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571692.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93483.1 Da    PI: 6.4248
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++p+  +r++L + +    +++ +q+kvWFqNrR +ek+
  XP_012571692.1 20 KYVRYTPEQVEALERVYHECPKPTSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 78
                    5679*****************************************************97 PP
2START173.21.7e-541593682205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT...EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg...galql 93 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+++v  ++a  v+e+l+d++ W ++++  ++l+v s+g   g+++l
  XP_012571692.1 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACALVSLEPA-RVAEILKDRLSWYRDCRTLDVLNVMSTGnggGTIEL 252
                     7899******************************************************.9999999999************************** PP

                     EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
           START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                      +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRa +lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+l
  XP_012571692.1 253 LYMQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPTmppVQHFVRADVLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPL 347
                     ********************************************9998899******************************************** PP

                     HHHHHHHHHHHHHHHTXXXXX CS
           START 185 vksglaegaktwvatlqrqce 205
                     ++s++  +++t++a+l+++++
  XP_012571692.1 348 YESSMLLAQRTTMAALRHLRQ 368
                     ****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3211579IPR001356Homeobox domain
SMARTSM003892.4E-151783IPR001356Homeobox domain
SuperFamilySSF466891.2E-161983IPR009057Homeodomain-like
CDDcd000863.54E-162080No hitNo description
PfamPF000467.3E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-182278IPR009057Homeodomain-like
CDDcd146861.04E-672111No hitNo description
PROSITE profilePS5084823.427149378IPR002913START domain
CDDcd088751.56E-74153369No hitNo description
SMARTSM002341.2E-39158369IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-19158365IPR023393START-like domain
SuperFamilySSF559612.88E-34158370No hitNo description
PfamPF018521.0E-51159368IPR002913START domain
PfamPF086701.6E-51710850IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MMAVSSGCKD GSKVVMDNGK YVRYTPEQVE ALERVYHECP KPTSLRRQQL IRDCPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENERLQKQV SQLVYQNTFF  120
RQHTQNGTVA TTDTSCESVV TSGQQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC PGVAARACAL VSLEPARVAE ILKDRLSWYR DCRTLDVLNV  240
MSTGNGGGTI ELLYMQLYAP TTLAPGRDFW LLRYTSLLED GSLVVCERSL NNTQNGPTMP  300
PVQHFVRADV LPSGYLIRPC EGGGSIIHIV DHMVLEPWSV PEVLRPLYES SMLLAQRTTM  360
AALRHLRQIS QEVSQPSVTG WGRRPTALRA LSQRLSKGFN EAVNGFTDDG WSMLESDGID  420
DITLLVNSSP SKMMGVNLGY NNGFPSMTSS VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DTSIDAYSAA AIKAGPCTLP GARAGGFGGQ VILPLAQTIE HEEFMEVIKL ENMGYYRDDM  540
TMPGDIFLLQ LCSGVDEHAV GTSAELIFAP IDASFSDDAP ILSSGFRIIP LDSCTDAASP  600
NRTLDLASAL EVGSAGNKAG GGANSGHSGN TKSVMTIAFQ FAFEVHLQDS IATMARQYVR  660
SIVASVQRVS LALSPSHFGS QNAFQLPHGI PHFGSQNAFQ LPHVIPEAQT LARWICNSYR  720
FYLGVELLKC EGSESILKSL WHHSDAVLCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT  780
LEKIFDDNGK KSLCSEFPQI MQQGFMCMQG GICLSSMGRA ITYERAVAWK VLNEEESAHC  840
ICFMFINWSF V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571692.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2912510.0JQ291251.1 Pisum sativum HB8 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571692.10.0homeobox-leucine zipper protein ATHB-8 isoform X1
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A1S3E7990.0A0A1S3E799_CICAR; homeobox-leucine zipper protein ATHB-8 isoform X1
STRINGXP_004501145.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]