PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HSF | ||||||||
Protein Properties | Length: 367aa MW: 41782.5 Da PI: 4.5677 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.8 | 9.4e-35 | 48 | 139 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+++++ed+++++++sws nsfvv+d ++f++++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++ XP_012571529.1 48 FLTKTFDVVEDPSTDSIVSWSIARNSFVVWDLHKFSTNILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLAGQRNLLKT 133 9********************888*****************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_012571529.1 134 IKRRRN 139 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 22 | No hit | No description |
SuperFamily | SSF46785 | 1.03E-31 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-58 | 44 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.2E-36 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.6E-30 | 48 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 48 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 87 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-18 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MKGITVKEEE TLTYTNVGST SCSSSSSSSS TLIPKPMEGL HDVGPPPFLT KTFDVVEDPS 60 TDSIVSWSIA RNSFVVWDLH KFSTNILPRY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN 120 EGFLAGQRNL LKTIKRRRNV TQSHVMQQET GGGACVELGE YGLEGEIERL RRDRTLLMAE 180 IMKLRQQQHN SRDQLSDMET RLLNTEKKHQ QMMNFLARAL SNQSFIQQLA NNKELKGVET 240 KRKRRLTASS SLENLHNDSV VDYCSQEQQE GLTTIESEIE NLLTAYDNES SSEIKEYPTL 300 SSVANASDDT VWEDLLNQEL VAGNPDDEVV IGDLSQINVP LEDLEEKKDD DWTVDLQNLV 360 DQMDFQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-25 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-25 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-25 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | LKTIKRR |
2 | 168 | 173 | RLRRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571529.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012571529.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_012571530.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_027190779.1 | 0.0 | heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-114 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A1S3E831 | 0.0 | A0A1S3E831_CICAR; heat shock factor protein HSF30 | ||||
STRING | XP_004501463.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8225 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-98 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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