PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Nin-like | ||||||||
Protein Properties | Length: 941aa MW: 104233 Da PI: 5.9874 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.6 | 1.3e-28 | 600 | 650 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCR++GI RWP+Rki+++ XP_012571480.1 600 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGILRWPSRKINKV 650 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.642 | 582 | 670 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.0E-25 | 602 | 650 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.6E-21 | 834 | 925 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 6.8E-23 | 838 | 920 | No hit | No description |
PROSITE profile | PS51745 | 18.962 | 841 | 923 | IPR000270 | PB1 domain |
SMART | SM00666 | 5.5E-22 | 841 | 923 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.4E-16 | 843 | 922 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.85E-30 | 844 | 922 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 941 aa Download sequence Send to blast |
MEYPFYHTGK GIGYWQSPGT QLEGSTSLDG GISNLVSEDM PSSFSELMNF DNYAGLCSGP 60 SMTDQIMANE LPALASVLYQ SSDGLNIVEQ NSGQFYMTEV GGNSNNPQSS PIYGEKIVCQ 120 QMDTLLGFLD NNDANNLSSK QKINGSLQHV NTFDTGNCVI PKPPALSLDE RMLKALSFFK 180 ESAGGGILAQ VWVPIKHGGQ VFLSTSEQPY LLDQMLAGYR EVSRTFTFSA EGKPGCLPGL 240 PGRVFISKVP EWTSNVGYYN PSEYLRVEHA RNHEVRGSIA FPIFDMHSGL PCCAVLELVT 300 TKEKPNFDKE LEIICRSLQL VNLRTNVPFR LLPECLSSNK RAALTEIVDV LRSVCHAHRL 360 PLALTWIPCF YTKGTRDETT RIQIKEGNSS SREKNILCIE ESACYITDRV MEGFVHACVE 420 HHLEEGKGVA GKALQSNHPF FYPDVKAYDI SEYPLVHHAR KYSLNASVAI RLRSTYTYND 480 DYILEFFLPI NMKGSSEQQL LLDSLSGTMQ RICTSLRTVS EAELSGIKSL QVGFEKKNDP 540 RFPPLSTQNS QIPSIKENNG SVQKLSLKAS NQRKNGNEPS CNQETNGPRR RVEKNKSTSE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRHHGIL RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKFDPSMGAF VAGGSTIQEI DEHESLFFPE KSTAQDPQNL ENKLEGKLKE 720 TNSSSVDCSE DSKSMAMDDC HEQACFGSVL GKSDKLVLNK GGLRIEKCKH NNTSSFFVDE 780 MDTCVDGDDE VVEHNNPTSS SLTDSSNGSG SMIHDISSGY EDFENQKHCK GKSTIVDGGS 840 KIVVKATYGE DTIRFKFDPS TGCFRLYEEV AARFKLQNGT FRLKYLDDEE EWVMLVNDSD 900 LQECLEILND MGTRNARFLV RDVPCVLSSS GSSNCYLGGS S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012571480.1 | 0.0 | protein NLP8-like | ||||
Refseq | XP_012571483.1 | 0.0 | protein NLP8-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A1S3E7U2 | 0.0 | A0A1S3E7U2_CICAR; protein NLP8-like | ||||
STRING | XP_004486872.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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