PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 895aa MW: 99285 Da PI: 8.0914 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.2e-19 | 340 | 439 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++ XP_012571339.1 340 FEKVLSASDAGRIGRLVLPKACAEAYfpPISHSEGLPLRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMDLRAGDTVTFSRID-PGEK 432 99**************************555556667***************9989999999***9.********************776.5555 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_012571339.1 433 LVMGFRK 439 5655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-30 | 336 | 448 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.29E-24 | 338 | 439 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-21 | 338 | 442 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-16 | 340 | 439 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-23 | 340 | 440 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.771 | 340 | 440 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.149 | 604 | 654 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.3E-11 | 609 | 651 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence Send to blast |
MGSDIGIVNG SCVHEWKKGW PLRSGGFVQL CFKCGFMEEW KCDIMDSLSA FENTVFCNKF 60 HRQQTGWREC NFCNKPIHCG CVVSRSLFEY LDFGGIGCVS CVNSPQLNMM RNTENPNWSV 120 SLTQNNARDM HSAHFDGRMF VGNNVDEGKL MQLCRVVEAS ESIRSNHPPR DGVISCNGKN 180 NQEVKHSFRE GDAGFSNTMK PSVQSLTFAT LENNLPTWEI KNMHESNVKP SLNMCLGNPS 240 GSNFFPPSTG ENIEGRLEGK ITPPFHQGPR SRPILPKLLK TGLTMNVETE KGMVSQSRIA 300 RPPADGRGKS QLLPRYWPRI TDQELERLSG DLKSTVVPLF EKVLSASDAG RIGRLVLPKA 360 CAEAYFPPIS HSEGLPLRVQ DVKGNEWTFQ FRFWPNNNSR MYVLEGVTPC IQSMDLRAGD 420 TVTFSRIDPG EKLVMGFRKA TNSIDAQDAS TSAHSNGISA KGATFSGGPE NLPSESNCAD 480 LLRPTKGNGE LHLNGHPEPM HLGTGAASLL KTENGDMTNN NSLDQKISAL EKKRTRNIGL 540 KSKRLIIGND DAMELTLTWE EAQDLLRPPP SVKPSIVMIE DQVFEEYDEP PVFGKRTIFS 600 GSSSGGKEQW AQCDDCSKWR KLPVDVLLPP KWSCSENVWD TSRSSCSAPD ELSPRELENL 660 LKTSKDFKKR RIVENSKLIQ EHEPSGLDAL ASVAVLGENL IDPADSSAGA TTKHPRHRPG 720 CSCIVCIQPP SGKGRHKPTC TCNVCTTVKR RFKTLMLRKK KRQSEREADA AAKKDLIRKR 780 DESDTNGASR HKAKSSFEKE GGLNRGKAEV GESSAGQIDL NCHPNREDSQ VDNNAKLSMS 840 SHHLENMNQN GGLTQSNGES KRNLSDERCI ASIVWNKERR DEVYKNSNES QNNMS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-67 | 318 | 447 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 748 | 759 | KRRFKTLMLRKK |
2 | 748 | 761 | KRRFKTLMLRKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571339.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500368.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_004500369.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_012571339.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Refseq | XP_027190600.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A1S2Y6V3 | 0.0 | A0A1S2Y6V3_CICAR; B3 domain-containing transcription repressor VAL1 | ||||
STRING | XP_004500368.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |