PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 853aa MW: 94475 Da PI: 6.391 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.8e-23 | 130 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_012571326.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WNE 220 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_012571326.1 221 KNQLLLGIRRA 231 9999****997 PP | |||||||
2 | Auxin_resp | 118 | 7.8e-39 | 256 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k XP_012571326.1 256 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 339 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-49 | 114 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-41 | 123 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-21 | 129 | 230 | No hit | No description |
SMART | SM01019 | 6.4E-24 | 130 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.308 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-21 | 130 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-34 | 256 | 339 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.8E-7 | 722 | 810 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.37E-6 | 724 | 800 | No hit | No description |
PROSITE profile | PS51745 | 24.119 | 726 | 810 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MKLSTSGLGQ QGHEGGGGEK KCLNSELWHA CAGPLVSLPT AGTRVVYFPQ GHSEQVSATT 60 NREIDGHIPN YPSLPPQLVC QLHNVTMHAD VETDEVYAQM TLQPLTPDEQ KDTFLPMELG 120 IPSKQPSNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDVEW 180 KFRHIFRGQP KRHLLTTGWS IFVSAKRLVA GDSVLFIWNE KNQLLLGIRR ANRPQTVMPS 240 SVLSSDSMHI GLLAAAAHAA ATNSCFTVFY NPRASPSEFV IPLSKYIKAV YHTRISVGMR 300 FRMLFETEES SVRRYMGTIT GISDLDAVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE 360 PLTTFPMYPS LFPVRLKRPW HPGTSSLLDG RDEAGNGLMW MRGGPADQGL NSLNFQGAAG 420 LLPWMQQRLD PSLLGNDQNQ QYQAMLAAGL QNMGSGYIMR PQMMNFQQQP IHYHLQSGNN 480 NSPLQLQQPQ AVQHSGSSNM LQPQQAQLLT ENLSQHLLQK PNNNQEVQAQ QQQHHTYQDT 540 LLIQNDQLHQ RQPSNVPSPS YSKPDFLDSN MKFTASVPPG QNMLSSLCSE GTGNLLNLSS 600 LSRGGQSLLT EQLPQQSWTP KYADMQVNAF GSTMSHAQYS GKDSAMVTPH CDSDAQNRTL 660 SGVNIDSSGL LLPTTVPGYT TSSADTDAST MQLGESGFQG SLYACMQDSS SFLHNAGQID 720 PQNQNPTFVK VYKLGSVGRS LDISRFSSYR ELREELGQMF GIEGKLEDPL RSGWQLVFVD 780 RENDVLLLGD DPWESFVNNV WYIKILSPED IQKMGEQAVE THALGSGQRL SDSGADSHHV 840 VSGQPPSIGS LEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 17 | 360 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571326.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151529 | 0.0 | AC151529.20 Medicago truncatula clone mth2-7n23, complete sequence. | |||
GenBank | CU468244 | 0.0 | CU468244.3 M.truncatula DNA sequence from clone MTH2-16M9 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012571326.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_012571327.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A1S3E685 | 0.0 | A0A1S3E685_CICAR; Auxin response factor | ||||
STRING | XP_004500428.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |