PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 19190.7 Da PI: 5.1805 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.6 | 3.6e-37 | 6 | 99 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+Ca++C++apyfp+e+p+kfa+vhk+FGasn +lp ++r++a++slvyeA+ar+rdPvyG+vg i+ lq+q+ ql+ +la XP_012571315.1 6 PCASCKLLRRRCAQECIFAPYFPSEDPRKFAIVHKVFGASN------ELPIHQRSEAVNSLVYEANARVRDPVYGCVGAISYLQNQVTQLQMQLA 94 7**************************************97......78999******************************************* PP DUF260 96 llkee 100 ++++e XP_012571315.1 95 VAQAE 99 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.157 | 5 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.9E-36 | 6 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGGSSPCASC KLLRRRCAQE CIFAPYFPSE DPRKFAIVHK VFGASNELPI HQRSEAVNSL 60 VYEANARVRD PVYGCVGAIS YLQNQVTQLQ MQLAVAQAEI LCIQMQQDPV SVTSSLPTYV 120 DQDDKLMLLS ENSNCYEPHL LPQYPNFPSS SSSSSNVFQD YEPLKRESFW T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-43 | 2 | 112 | 7 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-43 | 2 | 112 | 7 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571315.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU651581 | 1e-105 | CU651581.9 M.truncatula DNA sequence from clone MTH2-66L10 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500442.1 | 1e-118 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 7e-69 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1S2Y741 | 1e-117 | A0A1S2Y741_CICAR; LOB domain-containing protein 12 | ||||
STRING | XP_004500442.1 | 1e-117 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-69 | LBD family protein |
Publications ? help Back to Top | |||
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