PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NF-YA | ||||||||
Protein Properties | Length: 337aa MW: 36537.6 Da PI: 6.68 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.6 | 1.8e-32 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hA+rR+Rg+gGrF XP_012571278.1 172 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHAMRRARGTGGRF 228 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.9E-36 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.925 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.1E-28 | 173 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.7E-24 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.7E-24 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQSKSETANQ LSSDPHSFQP GGVYSEPWWR GVGYNPVAQT MSGANSSSLD CPNGDSESNE 60 EGQSLSNSGM NEEDDDAAKD SQPAAPNQPG NYGQEQQGMQ HTASSAPSVR EEGLTQTPQL 120 ELVGHSIACA TNPYQDPYYG GMMAAYGHQP LGYPPFIGMP HARMPLPLEM AQEPVYVNAK 180 QYQGILRRRQ ARAKAELERK LIKSRKPYLH ESRHQHAMRR ARGTGGRFAK KTDAEASNNS 240 GKDKDNGSGP VMSSQSISSS GSEPFPSDSA ETWNSPNVRQ NARASNENGG SGSYHNNNNG 300 MQSSRYHGER VDEGDCSGQL RGSISSKEAS QRRLAIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-19 | 172 | 228 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918270 | 0.0 | JQ918270.1 Medicago truncatula nuclear transcription factor Y subunit A5 (NF-YA5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500196.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_004500197.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_027190579.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q9LXV5 | 9e-86 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A1S2Y7R1 | 0.0 | A0A1S2Y7R1_CICAR; nuclear transcription factor Y subunit A-1 | ||||
STRING | XP_004500195.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 1e-84 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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