PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570975.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 526aa    MW: 60969.8 Da    PI: 9.8113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.6e-1122113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k+ +ps  ++++ l++p +f++++g++   +   t++ ++g  W+++l  +k+++ ++++++W+eF +   +  g  + Fk++g+s+f  +v 
  XP_012570975.1  22 FMKAILPSPIHATQ-LRIPDEFITRFGNE--LNNVTTITVPDGCIWKITL--NKCGKDVFFQNNWQEFTEYYSIGYGSYLDFKYKGKSKF--NVI 109
                     77888899999987.********999755..55566777899********..*********************************99999..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  XP_012570975.1 110 IFDS 113
                     8876 PP
2B339.97.4e-13275366199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k+ +ps  ++++ +++p +f++++g++   +   t++ ++gr+We+ l  +++++ +++ ++W+eF +   ++ g  ++Fk++g+s+f   v 
  XP_012570975.1 275 FKKAILPSPFHANK-IRIPDEFIKRFGNE--LNNVATIMVPDGRVWEIGL--ENCDEDVFFCNNWREFSEYYSIEYGCYLTFKYKGNSKF--SVV 362
                     77888899988887.********999855..667899999**********..**********************************9999..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  XP_012570975.1 363 IFDA 366
                     8876 PP
3B338.32.3e-12430510789
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +s  +k++  ++  +fae++ ++k   + ++l++++g++Wev + ++ ++   + +t+G  +F ++n+L  gD++v +l++++ 
  XP_012570975.1 430 RSTLNKNRYTYVASNFAEKYLLPK---VPIKLQNSHGQQWEVSCVFNMGRTFgMRITGGFCKFQRDNNLSLGDTCVYELIKTKP 510
                     566677888899********7775...35***************9988888789************************998532 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-1715114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1718113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-820112No hitNo description
PROSITE profilePS5086310.30621114IPR003340B3 DNA binding domain
SMARTSM010199.2E-622114IPR003340B3 DNA binding domain
PfamPF023621.4E-822113IPR003340B3 DNA binding domain
SMARTSM010190.62161251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-7166251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-7170249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.119191252IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18271367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-19272366IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-11273365No hitNo description
PROSITE profilePS5086311.702274367IPR003340B3 DNA binding domain
SMARTSM010191.6E-10275367IPR003340B3 DNA binding domain
PfamPF023624.1E-10276366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-14422521IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-12424519IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0023428518IPR003340B3 DNA binding domain
PfamPF023629.5E-10430509IPR003340B3 DNA binding domain
CDDcd100172.56E-9443509No hitNo description
PROSITE profilePS508638.868456519IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MQPRQSCVRS SAAEEKKKSK HFMKAILPSP IHATQLRIPD EFITRFGNEL NNVTTITVPD  60
GCIWKITLNK CGKDVFFQNN WQEFTEYYSI GYGSYLDFKY KGKSKFNVII FDSTSVEICY  120
PSTNEEPNIK CPRKISKVET SDKNHGTEFN SASKRAKDAA FFRSTFIKNR YPYVHSDFAS  180
KYLKPNVPFK LQNCHGQQWK VFCALQEAGK SAMRITRGFR KFARENNLSC RKEYEFKLIK  240
RKPVVVLQVT TSCTPCRRRC VGSSVEKEVR ESKHFKKAIL PSPFHANKIR IPDEFIKRFG  300
NELNNVATIM VPDGRVWEIG LENCDEDVFF CNNWREFSEY YSIEYGCYLT FKYKGNSKFS  360
VVIFDATSVE ICYPSTNEEP NIKSPSPNPG PKKRSKVDTT EKNHETKFIY ASKRAKDAAN  420
QFYPKNPFFR STLNKNRYTY VASNFAEKYL LPKVPIKLQN SHGQQWEVSC VFNMGRTFGM  480
RITGGFCKFQ RDNNLSLGDT CVYELIKTKP VVVLLVTEFR ADHYLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1541352533146B3 domain-containing transcription factor VRN1
4i1k_B2e-1541352533146B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190006.10.0putative B3 domain-containing protein Os03g0621600 isoform X3
TrEMBLA0A3Q7XZI40.0A0A3Q7XZI4_CICAR; putative B3 domain-containing protein Os03g0621600 isoform X3
STRINGXP_004499557.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein