PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570676.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 302aa    MW: 34787.4 Da    PI: 10.2077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-132967948
                     HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     d ll+dav+++ g++Wk+Ia+ +  gRt+ qc +rwqk+l
   XP_012570676.1 29 DRLLIDAVNKFNGKSWKKIAKAVS-GRTDVQCLHRWQKVL 67
                     679*********************.************986 PP
2Myb_DNA-binding55.81e-1773119148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT++Ed ll ++v   G+++W++I++ ++ gR +kqc++rw+++l
   XP_012570676.1  73 KGPWTQQEDNLLSELVMINGKKDWSRISKSLP-GRIGKQCRERWFNHL 119
                      79******************************.*************97 PP
3Myb_DNA-binding52.98.4e-17125167145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+eE+++l++ ++ +G++ W+ Ia+ ++ gR+++++k++w+
   XP_012570676.1 125 RTAWTKEEELILINNHQIYGNR-WAEIAKFLP-GRSENNIKNHWN 167
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1731767IPR017930Myb domain
SMARTSM007172.6E-62069IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-182979IPR009057Homeodomain-like
SuperFamilySSF466891.36E-122977IPR009057Homeodomain-like
CDDcd001675.04E-92967No hitNo description
PfamPF002494.7E-112967IPR001005SANT/Myb domain
PROSITE profilePS5129427.90868123IPR017930Myb domain
SuperFamilySSF466893.74E-3070166IPR009057Homeodomain-like
SMARTSM007171.6E-1672121IPR001005SANT/Myb domain
PfamPF002496.9E-1773119IPR001005SANT/Myb domain
CDDcd001671.16E-1375119No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2580126IPR009057Homeodomain-like
SMARTSM007171.2E-16124172IPR001005SANT/Myb domain
PROSITE profilePS5129420.204124174IPR017930Myb domain
PfamPF002492.6E-15125167IPR001005SANT/Myb domain
CDDcd001672.39E-12127167No hitNo description
Gene3DG3DSA:1.10.10.604.9E-22127174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVNYIATVHQ RKCGAKSFRI RRACLYSTDR LLIDAVNKFN GKSWKKIAKA VSGRTDVQCL  60
HRWQKVLNPD LIKGPWTQQE DNLLSELVMI NGKKDWSRIS KSLPGRIGKQ CRERWFNHLN  120
PDIKRTAWTK EEELILINNH QIYGNRWAEI AKFLPGRSEN NIKNHWNCSL KKRVDQLKDS  180
MNTTIYDNTQ SLDSNTDFDK ATSNKTSIES CEGQINGIND DTPQSINNDT TTFDVMNIGL  240
LATPNTSRSN SICDNNPSNS KEKSFDTSPS LQDIFRTLRN AARKFKNIPS ILRRPKKYYC  300
TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-562917414159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-562917414159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570676.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189441.10.0transcription factor MYB3R-2-like
SwissprotQ94FL97e-68MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLA0A3Q7XYN50.0A0A3Q7XYN5_CICAR; transcription factor MYB3R-2-like
STRINGXP_004498696.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.22e-70myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]