PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 281aa MW: 32215.2 Da PI: 9.8929 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.6 | 5e-16 | 39 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++++ s +p++++l+ XP_012570672.1 39 EWSEGAVSTLLEAYESKWILRNRAKLKGQDWEDVAKYVssrsNSTKSPKTQTQCKNKIESMKKRYRSESATSES------SAWPLYSRLD 122 5*************************************98777778889999***************9999986......5799999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.4E-19 | 37 | 122 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MNEKIETKDH NPQILNPKEE SPRKHIIIGS GGERLKRDEW SEGAVSTLLE AYESKWILRN 60 RAKLKGQDWE DVAKYVSSRS NSTKSPKTQT QCKNKIESMK KRYRSESATS ESSAWPLYSR 120 LDLLLRGTGQ LCSTIPTQHV TTTPSQLQHE DELETKSSDH VANKNPQDTD SSTPALYSEK 180 DERKCNKRRK KTENNNNRQK KEAMGIAESI RWLAEVVVRS EQTRMDTLKE IEKMRVEAEA 240 KRGEMEIKRT EIIANTQLEI ARIFANVNNK GVDSSLRIGR S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570672.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126006 | 1e-117 | AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence. | |||
GenBank | BT147422 | 1e-117 | BT147422.1 Medicago truncatula clone JCVI-FLMt-14I11 unknown mRNA. | |||
GenBank | CR956402 | 1e-117 | CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012570672.1 | 0.0 | trihelix transcription factor ASIL1 isoform X2 | ||||
TrEMBL | A0A1S3E4F0 | 0.0 | A0A1S3E4F0_CICAR; trihelix transcription factor ASIL1 isoform X2 | ||||
STRING | XP_004498689.1 | 1e-180 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 3e-94 | sequence-specific DNA binding transcription factors |