PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 503aa    MW: 56634.4 Da    PI: 8.3479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C k F r  nL+ H r H
  XP_012570580.1  6 FVCEVCQKGFQREQNLQLHRRGH 28
                    89*******************88 PP

2zf-C2H212.70.0003783105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_012570580.1  83 WKCEKCSKKYAVQSDWKAHSKTC 105
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.75E-7528No hitNo description
PROSITE profilePS5015710.803628IPR007087Zinc finger, C2H2
SMARTSM003550.0077628IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551204878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.75E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MATNRFVCEV CQKGFQREQN LQLHRRGHNL PWKLKQKSNN KEAKRKVYLC PEATCVHHDP  60
SRALGDLTGI KKHYYRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR  120
RDSFITHRAF CDALAHENSR HPSNMNPLGG THHHHLFATN HMSLGLSQLT SQLHHQNQNQ  180
NQQPTTNNIL TLGGGPNPTC TPKYEHLISH PSSSSFGQQQ SPQSPFFIND HHHPNQTFQD  240
LQSHQTLPFS NKQQQQLHLH GLMQLSHDLQ GPNNNNTNSS SSLSPFNLSF FPNNNSNTMN  300
DQFNNNISES EATTLFTNTH NHHGSSFSSI FANSSMQQQE NMSLSSPHMS ATALLQKAAQ  360
IGSTTTTNGV ESNQTLATYG NDDHSRRDQG IIRTISMEND QHHHEHLHGL MNSSIYGNHD  420
NNIAQFHNVE EAKKMSQQNL GDLCFGGSDK LTLDFLGVGG MVRNMSSSTS GGGFSQRDQQ  480
LHSISNINNM DPKLESTQPN QPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3479146370Zinc finger protein JACKDAW
5b3h_F5e-3479146370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498204.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_004498205.10.0protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A1S2Y4150.0A0A1S2Y415_CICAR; protein indeterminate-domain 5, chloroplastic-like isoform X1
STRINGXP_004498204.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.15e-84indeterminate(ID)-domain 5