PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 503aa MW: 56634.4 Da PI: 8.3479 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F r nL+ H r H XP_012570580.1 6 FVCEVCQKGFQREQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00037 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_012570580.1 83 WKCEKCSKKYAVQSDWKAHSKTC 105 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.75E-7 | 5 | 28 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0077 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 6.2E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 71 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.75E-7 | 78 | 103 | No hit | No description |
SMART | SM00355 | 140 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MATNRFVCEV CQKGFQREQN LQLHRRGHNL PWKLKQKSNN KEAKRKVYLC PEATCVHHDP 60 SRALGDLTGI KKHYYRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR 120 RDSFITHRAF CDALAHENSR HPSNMNPLGG THHHHLFATN HMSLGLSQLT SQLHHQNQNQ 180 NQQPTTNNIL TLGGGPNPTC TPKYEHLISH PSSSSFGQQQ SPQSPFFIND HHHPNQTFQD 240 LQSHQTLPFS NKQQQQLHLH GLMQLSHDLQ GPNNNNTNSS SSLSPFNLSF FPNNNSNTMN 300 DQFNNNISES EATTLFTNTH NHHGSSFSSI FANSSMQQQE NMSLSSPHMS ATALLQKAAQ 360 IGSTTTTNGV ESNQTLATYG NDDHSRRDQG IIRTISMEND QHHHEHLHGL MNSSIYGNHD 420 NNIAQFHNVE EAKKMSQQNL GDLCFGGSDK LTLDFLGVGG MVRNMSSSTS GGGFSQRDQQ 480 LHSISNINNM DPKLESTQPN QPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-34 | 79 | 146 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 5e-34 | 79 | 146 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498204.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
Refseq | XP_004498205.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
TrEMBL | A0A1S2Y415 | 0.0 | A0A1S2Y415_CICAR; protein indeterminate-domain 5, chloroplastic-like isoform X1 | ||||
STRING | XP_004498204.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 5e-84 | indeterminate(ID)-domain 5 |