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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_012570568.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family | G2-like | ||||||||
| Protein Properties | Length: 231aa MW: 26402.9 Da PI: 7.4418 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 31.9 | 2.9e-10 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55
m+vkgLt++hvkSHLQ+YR+
XP_012570568.1 1 MDVKGLTISHVKSHLQMYRS 20
9******************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.9E-9 | 1 | 23 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 231 aa Download sequence Send to blast |
MDVKGLTISH VKSHLQMYRS MRSDLCKQDR TSSVHKRQSF QEHDEVNDVG VLSFLESIGK 60 ESDSLFTCRN FSPKRARIEK TSNFLTGILQ CSQRICEADP NPYTTFYDYV QDMVEQQQKG 120 IKEICVGSIW QTQPQYCNIF PMLPKQDTHL FQVTKLKEKK HVNEIGKTKS VRAEDEEIGD 180 CELSLSISLP HLSPQRSNVS SANDIKDSGF RNYMGCSTVQ NRINLDLSLA I |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_012570568.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013442314.1 | 1e-123 | protein PHR1-LIKE 3 | ||||
| TrEMBL | A0A072TFN8 | 1e-121 | A0A072TFN8_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
| STRING | XP_004498202.1 | 1e-172 | (Cicer arietinum) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G14600.1 | 7e-07 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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