PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012570567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 28922.6 Da PI: 7.1648 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 13 | 105 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv + l+++ l+lp++f++++++ e s +tl ++ +We++ k+++ +++++GW++F++ + g f+vFk+d+ s+f v+ XP_012570567.1 13 FFKVIVETT-LQTNELMLPRSFVKKYEK--ELSNPVTLILPNDDKWEINW--IKRDNDVWFQNGWEKFAQHYSMSHGHFLVFKFDRGSKF--QVM 100 677775555.55556***********84..577889999***********..999999*************************9987888..9*9 PP EE-SS CS B3 96 vfrks 100 +f+ks XP_012570567.1 101 IFDKS 105 99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-22 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-22 | 10 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.38 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-16 | 12 | 103 | No hit | No description |
Pfam | PF02362 | 2.2E-13 | 13 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-17 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSLQINVDRK SSFFKVIVET TLQTNELMLP RSFVKKYEKE LSNPVTLILP NDDKWEINWI 60 KRDNDVWFQN GWEKFAQHYS MSHGHFLVFK FDRGSKFQVM IFDKSALEID YWSITTSSRN 120 DGERNNQNHE DVEKCENDNN YTEISVESER PRFLSPQPHK RMKTNYGINR ESSLKGKNYS 180 NDIEDNKRRI VALEETQRTA MNFRFDNPSF IRPLHPSYLE NVVTIYFMLF RNLDPRIIME 240 AL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012570567.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189403.1 | 1e-123 | uncharacterized protein LOC101507713 | ||||
TrEMBL | A0A3Q7XQ00 | 1e-121 | A0A3Q7XQ00_CICAR; uncharacterized protein LOC101507713 | ||||
STRING | AES97051 | 3e-83 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-23 | B3 family protein |