PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570566.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 453aa    MW: 52866.1 Da    PI: 8.8775
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-191412351100
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv  +s +l+ g l++p++f+++hg+++ +   + l++++g++W+++l  +kk+g +++ kGW eF+k   L+ g ++ F+ +++++ ++ v+
  XP_012570566.1 141 FFKVI-TSTTLQDGKLRIPNSFTKKHGNDTSN--PIFLKTPDGKKWKIYL--TKKDGDIWFHKGWMEFAKHYSLDHGHMMFFQCEEKETSQFDVH 230
                     67766.99999***************999666..5***************..*******************************987788888*** PP

                     EE-SS CS
              B3  96 vfrks 100
                     +f+ks
  XP_012570566.1 231 IFDKS 235
                     **985 PP
2B353.16e-17355441499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     v +ps+    + l++p +f  ++ +kk +s ++ l+ ++gr+W  ++  + ++    ++ GW++Fv++n+L+ gD+++F+l++++  +l+v +fr
  XP_012570566.1 355 VIKPSYLYYYS-LYVPSQFSINYLKKK-QS-DILLQLLDGRTWHARY--SYGK----IKVGWRKFVEDNKLENGDVCLFELTKSQALTLKVLIFR 440
                     45555555555.9******99995554.33.89999999********..5555....678**********************99*********98 PP

                     S CS
              B3  99 k 99 
                      
  XP_012570566.1 441 D 441
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.533169IPR003340B3 DNA binding domain
CDDcd100172.17E-8257No hitNo description
SuperFamilySSF1019361.24E-10359IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-7552IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-10559IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-21134235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.043140235IPR003340B3 DNA binding domain
CDDcd100172.58E-17140233No hitNo description
Gene3DG3DSA:2.40.330.109.2E-23140235IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-15141235IPR003340B3 DNA binding domain
PfamPF023621.5E-16141234IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-23344441IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-22345440IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-14350440No hitNo description
PROSITE profilePS5086313.535351442IPR003340B3 DNA binding domain
SMARTSM010196.4E-17352442IPR003340B3 DNA binding domain
PfamPF023625.8E-15355440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSNPIFLKTP DGKKWKIYLT KKDGDIWIHK GWKEFAIHYS LDHGHMMFFQ FDVHIFDKST  60
LEIEYNIHGI HYEHNNSIEN LDGQPPCKKF RKETNEDAGT SSKLQNMPKQ IQVKASLECQ  120
STSSMSCNQQ TKHSHPSIIR FFKVITSTTL QDGKLRIPNS FTKKHGNDTS NPIFLKTPDG  180
KKWKIYLTKK DGDIWFHKGW MEFAKHYSLD HGHMMFFQCE EKETSQFDVH IFDKSTLEIE  240
YNVHGTQHNL EQNSDNNVEI WDKPPNSFEK SRLKSPILPC SQPHKKLKTE TREGVGTSSN  300
LQTLPMPHVQ ASEDMDGGTE CLKMEHEQEQ LIYKMNEALN RARSFKSKNP SFIMVIKPSY  360
LYYYSLYVPS QFSINYLKKK QSDILLQLLD GRTWHARYSY GKIKVGWRKF VEDNKLENGD  420
VCLFELTKSQ ALTLKVLIFR DEEQPHSSPP KGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1633844335144B3 domain-containing transcription factor VRN1
4i1k_B1e-1633844335144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189947.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7YAS90.0A0A3Q7YAS9_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004498232.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-35B3 family protein