PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570484.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 339aa    MW: 37305.9 Da    PI: 5.6021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09183230455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L k +++++sLq
  XP_012570484.1 183 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 230
                     8*************************9....899999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-14177248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-9177234No hitNo description
PROSITE profilePS5088814.462179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14180243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEQSTLESIQ FNEEILGIMA PAPETANSFT ALLELPPTQV VELLHSSEHT GKLPLHVSNP  60
KPYPLTSVIC GGTSNLTFPS NAALVERAAR FSVFAGENPP QTEVKDEQQE TDSNPSLTQG  120
GGDCVSDPTV ENKNSKGAKR KQLEKKVKVS SKKSKSIADE NSGNGEELPY VHVRVRRGQA  180
TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD KIINHVQSLQ HEVEILSMKL  240
AAVNPIIDFN LDSILATEGV SLMDSNFPTT VTPVMWPEIS HNGNRPQFQQ PWQSDGFHQP  300
LWGREENNPN FMTPENSLLS YDSPANSVSL HSNQLKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570484.10.0transcription factor bHLH48-like
SwissprotQ3EAI11e-81BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A1S3E5260.0A0A1S3E526_CICAR; transcription factor bHLH48-like
STRINGXP_004497945.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]